Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Reverse (-)

59236349 .. 59237838

Gene Structure 1490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004423

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAAATGAAGAAGTTTCTATTGGTTGCTGCTCTTTCACTTGCTTTCGTGATTGGGGTGGCTGAGAGCTTTGATTACCATGAGAGAGACTTGGCCTCCGAGGACAGCTTGTGGGATCTGTACGAGAGGTGGAGGACCCACCACACGGTTTCGAGGAGCCTCGATGAGAAGCACAAGCGGTTCAATGTGTTCAAGGAGAATGTCAGGCATGTCCACAACACCAACAAAGAAGACAAGCCTTATAAGCTGAAGCTGAACAAGTTTGCTGACATGACCAACCATGAGTTCAGGAGCGCTTATGCTGGCTCCAAGGTTAAGCATCATAGGATGCTCCGAGGGCGGCGAAGTGGTGATGGGGCCTTCAGGTACGCGAACGTTGACGGTGTACCGCCGTCTGTCGACTGGAGAAAGAACGGTGCTGTCACACCAGTTAAGGATCAAGGCCAATGTGGTAGTTGCTGGGCGTTTTCAACGGTTGTAGCTGTTGAGGGCATCAACCAGATTAAGACAACGAACCTTGTTTCATTGTCAGAGCAAGAGTTGGTTGACTGTGACACTAAACAGAATCAAGGATGCAGTGGGGGGCTGATGGAGTTGGCGTTCGAGTTCATCAAACAAAAGGGTGGCCTAACAACCGAGACAAACTACCCTTACAGAGCAACTGATTCAACATGCAATGCGGCAAAGGAAAACAGTCCAGTTGTGTCAATTGATGGTCATGAGTCGGTGCCTGCTAATAATGAAGATGCATTGCTCAAAGCAGCTGCAAACCAACCTATCGCTGTTGCCATAGACGCCGGAGGTTCTGATTTTCAATTCTACTCGGAGGGAGTATATGATGGAAAATGTGGCACCGACCTGGATCACGGGGTTGCAGTTGTGGGATATGGAACAACACTCGATGGAACCAAGTACTGGACAGTCAAGAATTCTTGGGGCGACCAGTGGGGAGAAAAGGGTTACATAAGGATGGCTCGTGGTATTGCTGAGAAGGAGGGGAAATGTGGAATAGCAATGGAGGCCTCATATCCCATCAAAAACTCTTCAACTAATCCTACAGGAGCACCTACCTCCTACCCAAAGGATGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

365

Amino Acids

40.27

Weight (kDa)

6.28

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	41 - 96	9.4e-15	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	129 - 345	1.4e-84	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AccB1I	GGYRCC	2 cut(s)	727, 851
AccB7I	CCANNNNNTGG	1 cut(s)	915
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	1 cut(s)	371
AciI	CCGC	4 cut(s)	178, 340, 389, 680
AclI	AACGTT	1 cut(s)	375
AclWI	GGATC	3 cut(s)	123, 444, 870
AcsI	RAATTY	1 cut(s)	928
AcuI	CTGAAG	2 cut(s)	269, 346
AcyI	GRCGYC	1 cut(s)	795
AfaI	GTAC	4 cut(s)	122, 368, 387, 914
AfeI	AGCGCT	1 cut(s)	295
AfiI	CCNNNNNNNGG	2 cut(s)	145, 915
AgsI	TTSAA	6 cut(s)	184, 193, 471, 669, 815, 1047
AjnI	CCWGG	1 cut(s)	858
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 269, 301
AloI	GAACNNNNNNTCC	2 cut(s)	584, 616
AluBI	AGCT	6 cut(s)	69, 108, 247, 253, 482, 764
AluI	AGCT	6 cut(s)	69, 108, 247, 253, 482, 764
Alw21I	GWGCWC	1 cut(s)	1066
Alw26I	GTCTC	2 cut(s)	81, 632
AlwI	GGATC	3 cut(s)	123, 444, 870
Aor51HI	AGCGCT	1 cut(s)	295
AoxI	GGCC	5 cut(s)	93, 357, 442, 625, 1020
ApeKI	GCWGC	3 cut(s)	29, 761, 764
ApoI	RAATTY	1 cut(s)	928
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	2 cut(s)	135, 357
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	135
BanI	GGYRCC	2 cut(s)	727, 851
BauI	CACGAG	1 cut(s)	975
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	1066
BbvI	GCAGC	3 cut(s)	16, 751, 773
BccI	CCATC	7 cut(s)	347, 583, 707, 833, 896, 964, 1040
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	1 cut(s)	860
BcoDI	GTCTC	2 cut(s)	81, 632
BfmI	CTRYAG	1 cut(s)	1056
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	5 cut(s)	30, 341, 681, 762, 765
BlsI	GCNGC	5 cut(s)	31, 342, 682, 763, 766
BmcAI	AGTACT	1 cut(s)	914
Bme1390I	CCNGG	1 cut(s)	860
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	135, 357
BmiI	GGNNCC	7 cut(s)	137, 158, 307, 358, 729, 853, 907
BmrFI	CCNGG	1 cut(s)	860
BmsI	GCATC	5 cut(s)	318, 328, 501, 563, 736
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	424
BsaHI	GRCGYC	1 cut(s)	795
BsaJI	CCNNGG	3 cut(s)	99, 309, 334
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 584, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 915
Bse1I	ACTGG	5 cut(s)	407, 428, 698, 920, 943
Bse3DI	GCAATG	3 cut(s)	682, 749, 1020
BseBI	CCWGG	1 cut(s)	860
BseDI	CCNNGG	3 cut(s)	99, 309, 334
BseGI	GGATG	4 cut(s)	333, 578, 975, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	145, 915
BseMI	GCAATG	3 cut(s)	682, 749, 1020
BseMII	CTCAG	2 cut(s)	54, 978
BseNI	ACTGG	5 cut(s)	407, 428, 698, 920, 943
BseRI	GAGGAG	1 cut(s)	169
BseXI	GCAGC	3 cut(s)	16, 751, 773
BseYI	CCCAGC	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	5 cut(s)	95, 359, 444, 627, 1022
BshNI	GGYRCC	2 cut(s)	727, 851
BsiHKAI	GWGCWC	1 cut(s)	1066
BsiSI	CCGG	1 cut(s)	798
BslI	CCNNNNNNNGG	2 cut(s)	145, 915
BsmAI	GTCTC	2 cut(s)	81, 632
BsnI	GGCC	5 cut(s)	95, 359, 444, 627, 1022
Bsp1286I	GDGCHC	1 cut(s)	1066
Bsp143I	GATC	3 cut(s)	115, 436, 862
BspACI	CCGC	4 cut(s)	178, 340, 389, 680
BspANI	GGCC	5 cut(s)	95, 359, 444, 627, 1022
BspCNI	CTCAG	2 cut(s)	55, 979
BspFNI	CGCG	1 cut(s)	371
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	7 cut(s)	137, 158, 307, 358, 729, 853, 907
BspPI	GGATC	3 cut(s)	123, 444, 870
BspT107I	GGYRCC	2 cut(s)	727, 851
BsrDI	GCAATG	3 cut(s)	682, 749, 1020
BsrI	ACTGG	5 cut(s)	407, 428, 698, 920, 943
BssECI	CCNNGG	3 cut(s)	99, 309, 334
BssMI	GATC	3 cut(s)	115, 436, 862
BssNI	GRCGYC	1 cut(s)	795
BssSI	CACGAG	1 cut(s)	975
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	975
Bst2UI	CCWGG	1 cut(s)	860
Bst4CI	ACNGT	7 cut(s)	148, 383, 416, 475, 551, 695, 922
Bst6I	CTCTTC	1 cut(s)	1048
BstACI	GRCGYC	1 cut(s)	795
BstC8I	GCNNGC	2 cut(s)	304, 732
BstDEI	CTNAG	2 cut(s)	63, 987
BstF5I	GGATG	4 cut(s)	333, 578, 975, 1090
BstFNI	CGCG	1 cut(s)	371
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	3 cut(s)	118, 439, 865
BstMAI	GTCTC	2 cut(s)	81, 632
BstMBI	GATC	3 cut(s)	115, 436, 862
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 337, 794, 1019
BstNI	CCWGG	1 cut(s)	860
BstNSI	RCATGY	2 cut(s)	212, 675
BstSCI	CCNGG	1 cut(s)	858
BstSFI	CTRYAG	1 cut(s)	1056
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	3 cut(s)	16, 751, 773
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	5 cut(s)	95, 359, 444, 627, 1022
BtsCI	GGATG	4 cut(s)	333, 578, 975, 1090
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	2 cut(s)	583, 950
Cac8I	GCNNGC	2 cut(s)	304, 732
CciI	TCATGA	1 cut(s)	718
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	135, 357
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	4 cut(s)	121, 367, 386, 913
CviAII	CATG	6 cut(s)	80, 209, 271, 281, 672, 719
CviQI	GTAC	4 cut(s)	121, 367, 386, 913
DdeI	CTNAG	2 cut(s)	63, 987
DpnI	GATC	3 cut(s)	117, 438, 864
DpnII	GATC	3 cut(s)	115, 436, 862
Eam1104I	CTCTTC	1 cut(s)	1048
EarI	CTCTTC	1 cut(s)	1048
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	1022
Eco47I	GGWCC	1 cut(s)	135
Eco47III	AGCGCT	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	269, 346
EcoO109I	RGGNCCY	2 cut(s)	135, 357
EcoRI	GAATTC	1 cut(s)	928
EcoRII	CCWGG	1 cut(s)	858
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	6 cut(s)	83, 212, 274, 284, 675, 722
FatI	CATG	6 cut(s)	79, 208, 270, 280, 671, 718
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	5 cut(s)	30, 341, 681, 762, 765
FokI	GGATG	3 cut(s)	340, 585, 982
Fsp4HI	GCNGC	5 cut(s)	30, 341, 681, 762, 765
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	5 cut(s)	30, 341, 681, 762, 765
GsaI	CCCAGC	1 cut(s)	463
GsuI	CTGGAG	1 cut(s)	424
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	5 cut(s)	95, 359, 444, 627, 1022
HapII	CCGG	1 cut(s)	798
HgaI	GACGC	1 cut(s)	803
HhaI	GCGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	795
Hin1II	CATG	6 cut(s)	83, 212, 274, 284, 675, 722
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	3 cut(s)	379, 400, 547
HindII	GTYRAC	3 cut(s)	379, 400, 547
HinfI	GANTC	3 cut(s)	565, 665, 722
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	5 cut(s)	214, 379, 386, 400, 547
Hpy188I	TCNGA	5 cut(s)	100, 335, 532, 808, 826
Hpy188III	TCNNGA	4 cut(s)	49, 289, 719, 925
Hpy8I	GTNNAC	5 cut(s)	214, 379, 386, 400, 547
HpyAV	CCTTC	2 cut(s)	370, 985
HpyCH4III	ACNGT	7 cut(s)	148, 383, 416, 475, 551, 695, 922
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	5 cut(s)	576, 675, 749, 767, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 337, 794, 1019
HpyF3I	CTNAG	2 cut(s)	63, 987
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	795
Hsp92II	CATG	6 cut(s)	83, 212, 274, 284, 675, 722
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	115, 436, 862
LmnI	GCTCC	5 cut(s)	156, 291, 311, 336, 1061
Lsp1109I	GCAGC	3 cut(s)	16, 751, 773
LweI	GCATC	5 cut(s)	318, 328, 501, 563, 736
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	3 cut(s)	421, 551, 959
MalI	GATC	3 cut(s)	117, 438, 864
MboI	GATC	3 cut(s)	115, 436, 862
MboII	GAAGA	4 cut(s)	22, 242, 755, 1035
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	1066
MluCI	AATT	3 cut(s)	708, 815, 928
MlyI	GAGTC	1 cut(s)	731
Mph1103I	ATGCAT	1 cut(s)	751
MseI	TTAA	3 cut(s)	315, 432, 504
MslI	CAYNNNNRTG	1 cut(s)	968
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	1 cut(s)	860
MunI	CAATTG	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	860
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	4 cut(s)	244, 337, 794, 1019
NdeII	GATC	3 cut(s)	115, 436, 862
NlaIII	CATG	6 cut(s)	83, 212, 274, 284, 675, 722
NlaIV	GGNNCC	7 cut(s)	137, 158, 307, 358, 729, 853, 907
NmuCI	GTSAC	2 cut(s)	421, 551
NsiI	ATGCAT	1 cut(s)	751
NspI	RCATGY	2 cut(s)	212, 675
PagI	TCATGA	1 cut(s)	718
PceI	AGGCCT	1 cut(s)	1022
PfeI	GAWTC	2 cut(s)	565, 665
PflMI	CCANNNNNTGG	1 cut(s)	915
PkrI	GCNGC	5 cut(s)	31, 342, 682, 763, 766
PleI	GAGTC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	730
PpuMI	RGGWCCY	1 cut(s)	135
PsiI	TTATAA	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	858
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	858
PspN4I	GGNNCC	7 cut(s)	137, 158, 307, 358, 729, 853, 907
PspPI	GGNCC	2 cut(s)	135, 357
PspPPI	RGGWCCY	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	4 cut(s)	122, 368, 387, 914
RsaNI	GTAC	4 cut(s)	121, 367, 386, 913
RseI	CAYNNNNRTG	1 cut(s)	968
SalI	GTCGAC	1 cut(s)	398
SaqAI	TTAA	3 cut(s)	315, 432, 504
SatI	GCNGC	5 cut(s)	30, 341, 681, 762, 765
Sau3AI	GATC	3 cut(s)	115, 436, 862
Sau96I	GGNCC	2 cut(s)	135, 357
ScaI	AGTACT	1 cut(s)	914
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	1 cut(s)	860
SduI	GDGCHC	1 cut(s)	1066
SfaNI	GCATC	5 cut(s)	318, 328, 501, 563, 736
SfcI	CTRYAG	1 cut(s)	1056
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	968
Sse9I	AATT	3 cut(s)	708, 815, 928
SseBI	AGGCCT	1 cut(s)	1022
SsiI	CCGC	4 cut(s)	178, 340, 389, 680
StuI	AGGCCT	1 cut(s)	1022
StyD4I	CCNGG	1 cut(s)	858
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	7 cut(s)	148, 383, 416, 475, 551, 695, 922
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	5 cut(s)	152, 162, 399, 603, 900
TasI	AATT	3 cut(s)	708, 815, 928
TatI	WGTACW	1 cut(s)	912
TauI	GCSGC	2 cut(s)	343, 683
TfiI	GAWTC	2 cut(s)	565, 665
Tru1I	TTAA	3 cut(s)	315, 432, 504
Tru9I	TTAA	3 cut(s)	315, 432, 504
TscAI	CASTG	2 cut(s)	583, 950
TseFI	GTSAC	2 cut(s)	421, 551
TseI	GCWGC	3 cut(s)	29, 761, 764
Tsp45I	GTSAC	2 cut(s)	421, 551
TspDTI	ATGAA	4 cut(s)	23, 513, 598, 756
TspRI	CASTG	2 cut(s)	583, 950
Van91I	CCANNNNNTGG	1 cut(s)	915
VpaK11BI	GGWCC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	928
XceI	RCATGY	2 cut(s)	212, 675
XmiI	GTMKAC	1 cut(s)	399
ZrmI	AGTACT	1 cut(s)	914
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.