Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Reverse (-)

53795451 .. 53796971

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G027340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGCTCAGAAGACCATTTAAAGTAATTTCTTCATTTCTTGTTTTAGAGAATATGGGCAAGTTTATTCTGGTAGCTGTTTCAGTACTACTAGCTATAATTATTGGGATGGGTGAGAGCTTTCAATTCCAGGAGACGGACTTGGAATCTGAAGAGAGTCTGTACGTGGGACTTGTACGAGAGGTGAACCAGATGAGTAGGCCTTACAAGCTCAAGCTGAACAAGTTTGCGGACATGACCAACCACGAGTTTGTGAACTCCGGATATGCTAACTCAAAGGTTAGCCACTACCGGTCGTTGCATGGCAGCCGGAGGATAACCGGCTTCACGCATGATCAGACCGACAATCTTCCTCAAAGTGTTGACTGGAGGAAGAATGGAGCCGTCACCGGAGTTAAAGACCAAGGACAATGCTTTAGCTGCTGGGCATTTTCGACTGTAGTGGCAGTGGAGGGCCTCAACAAAATTAAAACGAACCAGCTCGTCTCTTTGTCCGAGCAGGAGCTTGTTGACTGCAATAGAGATAACGAAGGGTGTAGTGGCGGATTGACGGACAACGCATTTGATTTCATAAAGAAAACTGGTGGAATCACAACAGAGCAGAACTACCCTTACAAAGCCGTTGATGAGTCTTGTGACTCATCCAGGATGATGAATGCTCCTCTGATGGTAATTGATGGGTACGAAAACGTACCAGAAAATAACGAGAATGCCTTGATGAAAGCCGTGGCGAACCAACCTGTATCGGTTGCAATTGATGCTGATGGTAGAGATTTTCAGTTCTACAGAGCTTTCTATAAATATTTAATTATGTATGATTTCACTTGGTTATTGCAGGGTGTTTTCATCGGGCATTGTGGAACTGAGCTGAACCATGATGGAACCAAGTACTGGATTGTGAATAACTCATGGGGAACTGAATGGGGAGAGAAGGGTTTCATAAGGATGCAACGAGGCCTCCTACGGTCCTACCCCATGAAATCGTCCCGCTCAAACAACACCATCAAAGGATCCAAAACCTATTTCAAAGATGAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

345

Amino Acids

39.12

Weight (kDa)

6.12

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	116 - 326	3.1e-67	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	888
AccBSI	CCGCTC	1 cut(s)	987
AccIII	TCCGGA	1 cut(s)	257
AciI	CCGC	3 cut(s)	227, 540, 985
AclWI	GGATC	2 cut(s)	1002, 1015
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	6 cut(s)	84, 161, 174, 680, 690, 887
AfiI	CCNNNNNNNGG	2 cut(s)	133, 888
AgeI	ACCGGT	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	122, 1024
AjnI	CCWGG	2 cut(s)	126, 641
AjuI	GAANNNNNNNTTGG	2 cut(s)	1004, 1036
Alw26I	GTCTC	2 cut(s)	125, 487
AlwI	GGATC	2 cut(s)	1002, 1015
Aor13HI	TCCGGA	1 cut(s)	257
AoxI	GGCC	3 cut(s)	197, 451, 952
ApeKI	GCWGC	2 cut(s)	303, 417
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
AsiGI	ACCGGT	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	932
AspS9I	GGNCC	2 cut(s)	451, 963
AsuHPI	GGTGA	3 cut(s)	122, 193, 376
AvaII	GGWCC	1 cut(s)	963
BamHI	GGATCC	1 cut(s)	1007
BauI	CACGAG	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	315, 404
BccI	CCATC	6 cut(s)	100, 658, 668, 755, 869, 1007
BceAI	ACGGC	3 cut(s)	365, 602, 707
BciT130I	CCWGG	2 cut(s)	128, 643
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	125, 487
BfaI	CTAG	2 cut(s)	89, 1036
BfmI	CTRYAG	2 cut(s)	435, 781
BisI	GCNGC	2 cut(s)	304, 418
BlsI	GCNGC	2 cut(s)	305, 419
BmcAI	AGTACT	2 cut(s)	84, 887
Bme1390I	CCNGG	2 cut(s)	128, 643
Bme18I	GGWCC	1 cut(s)	963
BmgT120I	GGNCC	2 cut(s)	451, 963
BmiI	GGNNCC	3 cut(s)	379, 880, 1009
BmrFI	CCNGG	2 cut(s)	128, 643
BmsI	GCATC	2 cut(s)	745, 933
BpiI	GAAGAC	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	385
BpuEI	CTTGAG	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	400, 723
BsaWI	WCCGGW	3 cut(s)	257, 288, 386
BsaXI	ACNNNNNCTCC	2 cut(s)	939, 969
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 888
Bse118I	RCCGGY	2 cut(s)	288, 317
Bse1I	ACTGG	3 cut(s)	368, 583, 893
BseAI	TCCGGA	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	128, 643
BseDI	CCNNGG	2 cut(s)	400, 723
BseGI	GGATG	4 cut(s)	111, 638, 651, 948
BseLI	CCNNNNNNNGG	2 cut(s)	133, 888
BseMII	CTCAG	2 cut(s)	19, 852
BseNI	ACTGG	3 cut(s)	368, 583, 893
BseRI	GAGGAG	1 cut(s)	648
BseXI	GCAGC	2 cut(s)	315, 404
BseYI	CCCAGC	1 cut(s)	420
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	3 cut(s)	199, 453, 954
BshTI	ACCGGT	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	293
BsiSI	CCGG	5 cut(s)	258, 289, 307, 318, 387
BslFI	GGGAC	2 cut(s)	180, 967
BslI	CCNNNNNNNGG	2 cut(s)	133, 888
BsmAI	GTCTC	2 cut(s)	125, 487
BsmBI	CGTCTC	2 cut(s)	125, 487
BsmFI	GGGAC	2 cut(s)	180, 967
BsmI	GAATGC	2 cut(s)	658, 712
BsnI	GGCC	3 cut(s)	199, 453, 954
Bsp13I	TCCGGA	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	331, 1007
BspACI	CCGC	3 cut(s)	227, 540, 985
BspANI	GGCC	3 cut(s)	199, 453, 954
BspCNI	CTCAG	2 cut(s)	18, 853
BspEI	TCCGGA	1 cut(s)	257
BspLI	GGNNCC	3 cut(s)	379, 880, 1009
BspPI	GGATC	2 cut(s)	1002, 1015
BsrBI	CCGCTC	1 cut(s)	987
BsrFI	RCCGGY	2 cut(s)	288, 317
BsrI	ACTGG	3 cut(s)	368, 583, 893
BssAI	RCCGGY	2 cut(s)	288, 317
BssECI	CCNNGG	2 cut(s)	400, 723
BssMI	GATC	2 cut(s)	331, 1007
BssSI	CACGAG	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	2 cut(s)	128, 643
Bst4CI	ACNGT	2 cut(s)	436, 963
Bst6I	CTCTTC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstBAI	YACGTR	1 cut(s)	163
BstDEI	CTNAG	2 cut(s)	5, 861
BstDSI	CCRYGG	1 cut(s)	723
BstF5I	GGATG	4 cut(s)	111, 638, 651, 948
BstKTI	GATC	2 cut(s)	334, 1010
BstMAI	GTCTC	2 cut(s)	125, 487
BstMBI	GATC	2 cut(s)	331, 1007
BstMCI	CGRYCG	1 cut(s)	293
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 417, 755
BstNI	CCWGG	2 cut(s)	128, 643
BstSCI	CCNGG	2 cut(s)	126, 641
BstSFI	CTRYAG	2 cut(s)	435, 781
BstV1I	GCAGC	2 cut(s)	315, 404
BstV2I	GAAGAC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	1007
BstYI	RGATCY	1 cut(s)	1007
BsuRI	GGCC	3 cut(s)	199, 453, 954
BtgI	CCRYGG	1 cut(s)	723
BtsCI	GGATG	4 cut(s)	111, 638, 651, 948
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	450
Cfr10I	RCCGGY	2 cut(s)	288, 317
Cfr13I	GGNCC	2 cut(s)	451, 963
Csp6I	GTAC	6 cut(s)	83, 160, 173, 679, 689, 886
CspAI	ACCGGT	1 cut(s)	288
CviAII	CATG	6 cut(s)	232, 299, 329, 872, 906, 973
CviQI	GTAC	6 cut(s)	83, 160, 173, 679, 689, 886
DdeI	CTNAG	2 cut(s)	5, 861
DpnI	GATC	2 cut(s)	333, 1009
DpnII	GATC	2 cut(s)	331, 1007
DraI	TTTAAA	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	555
Eco130I	CCWWGG	1 cut(s)	400
Eco147I	AGGCCT	2 cut(s)	199, 954
Eco47I	GGWCC	1 cut(s)	963
Eco57I	CTGAAG	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	126, 641
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
Esp3I	CGTCTC	2 cut(s)	125, 487
FaeI	CATG	6 cut(s)	235, 302, 332, 875, 909, 976
FaqI	GGGAC	2 cut(s)	180, 967
FatI	CATG	6 cut(s)	231, 298, 328, 871, 905, 972
FauI	CCCGC	1 cut(s)	992
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	304, 418
FokI	GGATG	4 cut(s)	118, 625, 658, 955
Fsp4HI	GCNGC	2 cut(s)	304, 418
FspBI	CTAG	2 cut(s)	89, 1036
GluI	GCNGC	2 cut(s)	304, 418
GsaI	CCCAGC	1 cut(s)	424
GsuI	CTGGAG	1 cut(s)	385
HaeIII	GGCC	3 cut(s)	199, 453, 954
HapII	CCGG	5 cut(s)	258, 289, 307, 318, 387
Hin1II	CATG	6 cut(s)	235, 302, 332, 875, 909, 976
HincII	GTYRAC	2 cut(s)	361, 508
HindII	GTYRAC	2 cut(s)	361, 508
HinfI	GANTC	5 cut(s)	143, 154, 585, 626, 635
HpaII	CCGG	5 cut(s)	258, 289, 307, 318, 387
HphI	GGTGA	3 cut(s)	122, 193, 376
Hpy166II	GTNNAC	4 cut(s)	184, 253, 361, 508
Hpy188I	TCNGA	5 cut(s)	8, 148, 336, 493, 663
Hpy188III	TCNNGA	1 cut(s)	258
Hpy8I	GTNNAC	4 cut(s)	184, 253, 361, 508
HpyAV	CCTTC	2 cut(s)	521, 922
HpyCH4III	ACNGT	2 cut(s)	436, 963
HpyCH4IV	ACGT	2 cut(s)	162, 687
HpyCH4V	TGCA	5 cut(s)	298, 513, 749, 832, 946
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 417, 755
HpyF3I	CTNAG	2 cut(s)	5, 861
HpySE526I	ACGT	2 cut(s)	162, 687
Hsp92II	CATG	6 cut(s)	235, 302, 332, 875, 909, 976
Kpn2I	TCCGGA	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	331, 1007
LmnI	GCTCC	3 cut(s)	377, 499, 661
Lsp1109I	GCAGC	2 cut(s)	315, 404
LweI	GCATC	2 cut(s)	745, 933
MaeI	CTAG	2 cut(s)	89, 1036
MaeII	ACGT	2 cut(s)	162, 687
MaeIII	GTNAC	2 cut(s)	382, 632
MalI	GATC	2 cut(s)	333, 1009
MbiI	CCGCTC	1 cut(s)	987
MboI	GATC	2 cut(s)	331, 1007
MboII	GAAGA	5 cut(s)	21, 21, 161, 338, 382
MfeI	CAATTG	1 cut(s)	750
MflI	RGATCY	1 cut(s)	1007
MluCI	AATT	7 cut(s)	24, 96, 122, 462, 669, 750, 804
MlyI	GAGTC	3 cut(s)	163, 629, 635
MnlI	CCTC	9 cut(s)	172, 303, 360, 360, 442, 464, 669, 944, 965
MroI	TCCGGA	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	932
MseI	TTAA	4 cut(s)	18, 393, 465, 803
MslI	CAYNNNNRTG	1 cut(s)	941
MspI	CCGG	5 cut(s)	258, 289, 307, 318, 387
MspR9I	CCNGG	2 cut(s)	128, 643
MunI	CAATTG	1 cut(s)	750
Mva1269I	GAATGC	2 cut(s)	658, 712
MvaI	CCWGG	2 cut(s)	128, 643
MwoI	GCNNNNNNNGC	3 cut(s)	205, 417, 755
NdeII	GATC	2 cut(s)	331, 1007
NlaIII	CATG	6 cut(s)	235, 302, 332, 875, 909, 976
NlaIV	GGNNCC	3 cut(s)	379, 880, 1009
NmuCI	GTSAC	2 cut(s)	382, 632
PceI	AGGCCT	2 cut(s)	199, 954
PctI	GAATGC	2 cut(s)	658, 712
PdmI	GAANNNNTTC	1 cut(s)	932
PfeI	GAWTC	2 cut(s)	143, 585
PflMI	CCANNNNNTGG	1 cut(s)	888
PfoI	TCCNGGA	2 cut(s)	126, 641
PinAI	ACCGGT	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	305, 419
PleI	GAGTC	3 cut(s)	162, 629, 634
PpsI	GAGTC	3 cut(s)	162, 629, 634
Ppu21I	YACGTR	1 cut(s)	163
Psp6I	CCWGG	2 cut(s)	126, 641
PspFI	CCCAGC	1 cut(s)	420
PspGI	CCWGG	2 cut(s)	126, 641
PspN4I	GGNNCC	3 cut(s)	379, 880, 1009
PspPI	GGNCC	2 cut(s)	451, 963
PsrI	GAACNNNNNNTAC	2 cut(s)	593, 625
PsuI	RGATCY	1 cut(s)	1007
RsaI	GTAC	6 cut(s)	84, 161, 174, 680, 690, 887
RsaNI	GTAC	6 cut(s)	83, 160, 173, 679, 689, 886
RseI	CAYNNNNRTG	1 cut(s)	941
SaqAI	TTAA	4 cut(s)	18, 393, 465, 803
SatI	GCNGC	2 cut(s)	304, 418
Sau3AI	GATC	2 cut(s)	331, 1007
Sau96I	GGNCC	2 cut(s)	451, 963
ScaI	AGTACT	2 cut(s)	84, 887
SchI	GAGTC	3 cut(s)	163, 629, 635
ScrFI	CCNGG	2 cut(s)	128, 643
SfaNI	GCATC	2 cut(s)	745, 933
SfcI	CTRYAG	2 cut(s)	435, 781
SinI	GGWCC	1 cut(s)	963
SmiMI	CAYNNNNRTG	1 cut(s)	941
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	7 cut(s)	24, 96, 122, 462, 669, 750, 804
SseBI	AGGCCT	2 cut(s)	199, 954
SsiI	CCGC	3 cut(s)	227, 540, 985
SspI	AATATT	1 cut(s)	800
SspMI	CTAG	2 cut(s)	89, 1036
StuI	AGGCCT	2 cut(s)	199, 954
StyD4I	CCNGG	2 cut(s)	126, 641
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	436, 963
TaiI	ACGT	2 cut(s)	165, 690
TaqI	TCGA	1 cut(s)	431
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	7 cut(s)	24, 96, 122, 462, 669, 750, 804
TatI	WGTACW	2 cut(s)	82, 885
TfiI	GAWTC	2 cut(s)	143, 585
Tru1I	TTAA	4 cut(s)	18, 393, 465, 803
Tru9I	TTAA	4 cut(s)	18, 393, 465, 803
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	2 cut(s)	382, 632
TseI	GCWGC	2 cut(s)	303, 417
Tsp45I	GTSAC	2 cut(s)	382, 632
TspDTI	ATGAA	7 cut(s)	21, 556, 665, 731, 832, 925, 989
TspGWI	ACGGA	2 cut(s)	149, 563
TspRI	CASTG	1 cut(s)	450
Van91I	CCANNNNNTGG	1 cut(s)	888
VpaK11BI	GGWCC	1 cut(s)	963
XmnI	GAANNNNTTC	1 cut(s)	932
XspI	CTAG	2 cut(s)	89, 1036
ZrmI	AGTACT	2 cut(s)	84, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.