Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Forward (+)

17905725 .. 17907690

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAAACTTTTCTTTATTGTTCTCATCTCTTTTCTTTCCCTCCTCCAAGCATCAAAAGGATTCGATTTCGACGAAAAAGAATTAGAAACCGAAGAGAACGTATGGAAGCTCTATGAGAGGTGGAGAGGCCACCACTCTGTATCCAGAGCCTCCCACGAGGCAATAAAGCGGTTCAACGTTTTTAGACACAATGTCCTTCATGTCCACAGGACTAACAAAAAGAACAAGCCTTACAAACTCAAGATCAATAGATTCGCCGACATAACGCACCACGAGTTTAGAAGCTCCTACGCTGGCTCTAATGTTAAGCATCACCGAATGCTTCGTGGACCGAAGCGCGGATCTGGTGGTTTCATGTATGAGAATGTGACCAGAGTTCCGAGTTCTGTTGATTGGCGAGAGAAAGGAGCTGTCACTGAGGTCAAGAATCAACAAGATTGTGGAAGTTGCTGGGCGTTTTCGACGGTTGCAGCAGTGGAAGGGATAAACAAGATCAGAACAAACAAACTGGTTTCATTGTCTGAACAAGAGCTTGTGGATTGTGACACTGAAGAGAATCAAGGTTGTGCAGGAGGTCTCATGGAACCTGCGTTTGAATTTATAAAGAACAATGGTGGCATCAAAACCGAAGAGACTTATCCTTACGATTCCAGTGACGTTCAATTCTGTAGAGCTAATAGTATTGGTGGAGAAACTGTAACCATCGATGGACACGAACACGTCCCTGAGAATGATGAGGAAGAACTTCTCAAAGCTGTTGCTCACCAGCCTGTCTCTGTAGCTATTGATGCTGGGAGCTCAGATTTCCAGCTTTACTCTGAGGGTGTGTTTATCGGAGAATGCGGGACTCAGTTGAACCACGGGGTGGTGATTGTTGGGTATGGAGAGACCAAAAATGGAACAAAATATTGGATAGTAAGGAACTCATGGGGACCTGAATGGGGAGAAGGAGGCTATGTTCGGATAGAAAGAGGAATATCGGAGAATGAAGGACGTTGCGGTATAGCCATGGAGGCTTCTTATCCCACCAAGCTCTCTTCGACTCCTTCTACTCATGAGTCAGTAGTTCGTGATGATGTTAAAGACGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

364

Amino Acids

40.97

Weight (kDa)

5.87

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	38 - 93	6.7e-11	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	126 - 343	9.3e-84	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	595
AccB7I	CCANNNNNTGG	1 cut(s)	865
AccII	CGCG	1 cut(s)	339
AciI	CCGC	4 cut(s)	169, 339, 843, 999
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	570
AdeI	CACNNNGTG	1 cut(s)	865
AfiI	CCNNNNNNNGG	3 cut(s)	338, 865, 941
AflIII	ACRYGT	1 cut(s)	718
AgsI	TTSAA	4 cut(s)	175, 596, 662, 856
AhdI	GACNNNNNGTC	1 cut(s)	191
AjiI	CACGTC	1 cut(s)	721
AjuI	GAANNNNNNNTTGG	2 cut(s)	892, 924
AloI	GAACNNNNNNTCC	2 cut(s)	942, 974
Alw21I	GWGCWC	2 cut(s)	800, 1092
Alw26I	GTCTC	4 cut(s)	581, 626, 778, 881
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	596
Asp700I	GAANNNNTTC	2 cut(s)	8, 744
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	2 cut(s)	329, 932
AsuHPI	GGTGA	3 cut(s)	305, 755, 880
AvaII	GGWCC	2 cut(s)	329, 932
BanII	GRGCYC	2 cut(s)	800, 1092
BauI	CACGAG	2 cut(s)	155, 272
Bbv12I	GWGCWC	2 cut(s)	800, 1092
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	2 cut(s)	701, 710
BciVI	GTATCC	1 cut(s)	151
BcoDI	GTCTC	4 cut(s)	581, 626, 778, 881
BfaI	CTAG	1 cut(s)	1093
BfmI	CTRYAG	2 cut(s)	667, 777
BfuAI	ACCTGC	1 cut(s)	595
BfuI	GTATCC	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	1013
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme18I	GGWCC	2 cut(s)	329, 932
BmeRI	GACNNNNNGTC	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	721
BmgT120I	GGNCC	2 cut(s)	329, 932
BmiI	GGNNCC	2 cut(s)	585, 933
BmsI	GCATC	4 cut(s)	59, 319, 627, 778
BpuEI	CTTGAG	1 cut(s)	224
Bsa29I	ATCGAT	1 cut(s)	705
BsaI	GGTCTC	2 cut(s)	581, 881
BsaJI	CCNNGG	2 cut(s)	859, 1008
BsaXI	ACNNNNNCTCC	4 cut(s)	681, 711, 942, 972
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 865, 941
Bse1I	ACTGG	2 cut(s)	513, 651
BseCI	ATCGAT	1 cut(s)	705
BseDI	CCNNGG	2 cut(s)	859, 1008
BseLI	CCNNNNNNNGG	3 cut(s)	338, 865, 941
BseMII	CTCAG	5 cut(s)	408, 717, 810, 813, 863
BseNI	ACTGG	2 cut(s)	513, 651
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	482
BseYI	CCCAGC	2 cut(s)	450, 791
BsgI	GTGCAG	1 cut(s)	588
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	129
BshVI	ATCGAT	1 cut(s)	705
BsiHKAI	GWGCWC	2 cut(s)	800, 1092
BslFI	GGGAC	3 cut(s)	707, 859, 945
BslI	CCNNNNNNNGG	3 cut(s)	338, 865, 941
BsmAI	GTCTC	4 cut(s)	581, 626, 778, 881
BsmFI	GGGAC	3 cut(s)	707, 859, 945
BsmI	GAATGC	2 cut(s)	324, 845
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	2 cut(s)	581, 881
Bsp1286I	GDGCHC	2 cut(s)	800, 1092
Bsp143I	GATC	3 cut(s)	243, 341, 492
Bsp19I	CCATGG	1 cut(s)	1008
BspACI	CCGC	4 cut(s)	169, 339, 843, 999
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	5 cut(s)	409, 718, 811, 812, 862
BspDI	ATCGAT	1 cut(s)	705
BspFNI	CGCG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	1054
BspLI	GGNNCC	2 cut(s)	585, 933
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	349
BspTNI	GGTCTC	2 cut(s)	581, 881
BsrI	ACTGG	2 cut(s)	513, 651
BssECI	CCNNGG	2 cut(s)	859, 1008
BssMI	GATC	3 cut(s)	243, 341, 492
BssSI	CACGAG	2 cut(s)	155, 272
BssT1I	CCWWGG	1 cut(s)	1008
Bst2BI	CACGAG	2 cut(s)	155, 272
Bst4CI	ACNGT	2 cut(s)	466, 697
Bst6I	CTCTTC	4 cut(s)	87, 546, 624, 1042
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	5 cut(s)	417, 726, 799, 819, 849
BstDSI	CCRYGG	2 cut(s)	859, 1008
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	3 cut(s)	246, 344, 495
BstMAI	GTCTC	4 cut(s)	581, 626, 778, 881
BstMBI	GATC	3 cut(s)	243, 341, 492
BstMWI	GCNNNNNNNGC	2 cut(s)	788, 1013
BstSFI	CTRYAG	2 cut(s)	667, 777
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
Bsu15I	ATCGAT	1 cut(s)	705
BsuI	GTATCC	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	705
BtgI	CCRYGG	2 cut(s)	859, 1008
BtrI	CACGTC	1 cut(s)	721
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	4 cut(s)	414, 480, 546, 658
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	1 cut(s)	295
CciI	TCATGA	1 cut(s)	1054
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	2 cut(s)	329, 932
ClaI	ATCGAT	1 cut(s)	705
CviAII	CATG	6 cut(s)	200, 355, 580, 927, 1009, 1055
DdeI	CTNAG	5 cut(s)	417, 726, 799, 819, 849
DpnI	GATC	3 cut(s)	245, 343, 494
DpnII	GATC	3 cut(s)	243, 341, 492
DraIII	CACNNNGTG	1 cut(s)	865
DriI	GACNNNNNGTC	1 cut(s)	191
Eam1104I	CTCTTC	4 cut(s)	87, 546, 624, 1042
Eam1105I	GACNNNNNGTC	1 cut(s)	191
EarI	CTCTTC	4 cut(s)	87, 546, 624, 1042
Ecl136II	GAGCTC	2 cut(s)	798, 1090
Eco130I	CCWWGG	1 cut(s)	1008
Eco24I	GRGCYC	2 cut(s)	800, 1092
Eco31I	GGTCTC	2 cut(s)	581, 881
Eco47I	GGWCC	2 cut(s)	329, 932
Eco53kI	GAGCTC	2 cut(s)	798, 1090
Eco57I	CTGAAG	1 cut(s)	570
EcoICRI	GAGCTC	2 cut(s)	798, 1090
EcoO109I	RGGNCCY	1 cut(s)	932
EcoT14I	CCWWGG	1 cut(s)	1008
EcoT38I	GRGCYC	2 cut(s)	800, 1092
ErhI	CCWWGG	1 cut(s)	1008
FaeI	CATG	6 cut(s)	203, 358, 583, 930, 1012, 1058
FaqI	GGGAC	3 cut(s)	707, 859, 945
FatI	CATG	6 cut(s)	199, 354, 579, 926, 1008, 1054
FauI	CCCGC	1 cut(s)	836
Fnu4HI	GCNGC	1 cut(s)	471
FriOI	GRGCYC	2 cut(s)	800, 1092
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	1 cut(s)	1093
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	1 cut(s)	471
GsaI	CCCAGC	2 cut(s)	454, 795
HaeIII	GGCC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	6 cut(s)	203, 358, 583, 930, 1012, 1058
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HinfI	GANTC	8 cut(s)	60, 252, 427, 556, 647, 847, 1042, 1058
HphI	GGTGA	3 cut(s)	305, 755, 880
Hpy166II	GTNNAC	2 cut(s)	205, 329
Hpy188I	TCNGA	8 cut(s)	381, 497, 523, 802, 820, 836, 963, 982
Hpy188III	TCNNGA	5 cut(s)	144, 241, 424, 1055, 1070
Hpy8I	GTNNAC	2 cut(s)	205, 329
Hpy99I	CGWCG	2 cut(s)	74, 466
HpyAV	CCTTC	5 cut(s)	206, 473, 941, 983, 1056
HpyCH4III	ACNGT	2 cut(s)	466, 697
HpyCH4IV	ACGT	5 cut(s)	99, 177, 657, 720, 994
HpyCH4V	TGCA	2 cut(s)	470, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	788, 1013
HpyF3I	CTNAG	5 cut(s)	417, 726, 799, 819, 849
HpySE526I	ACGT	5 cut(s)	99, 177, 657, 720, 994
Hsp92II	CATG	6 cut(s)	203, 358, 583, 930, 1012, 1058
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	243, 341, 492
LmnI	GCTCC	3 cut(s)	290, 407, 795
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	4 cut(s)	59, 319, 627, 778
MaeI	CTAG	1 cut(s)	1093
MaeII	ACGT	5 cut(s)	99, 177, 657, 720, 994
MaeIII	GTNAC	5 cut(s)	367, 412, 542, 653, 697
MalI	GATC	3 cut(s)	245, 343, 494
MboI	GATC	3 cut(s)	243, 341, 492
MboII	GAAGA	5 cut(s)	104, 563, 641, 752, 1029
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	2 cut(s)	800, 1092
MluCI	AATT	3 cut(s)	80, 596, 662
MlyI	GAGTC	3 cut(s)	841, 1036, 1067
MroXI	GAANNNNTTC	2 cut(s)	8, 744
MseI	TTAA	2 cut(s)	306, 1080
Mva1269I	GAATGC	2 cut(s)	324, 845
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	788, 1013
NcoI	CCATGG	1 cut(s)	1008
NdeII	GATC	3 cut(s)	243, 341, 492
NlaIII	CATG	6 cut(s)	203, 358, 583, 930, 1012, 1058
NlaIV	GGNNCC	2 cut(s)	585, 933
NmuCI	GTSAC	4 cut(s)	367, 412, 542, 653
PagI	TCATGA	1 cut(s)	1054
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 711
PctI	GAATGC	2 cut(s)	324, 845
PdmI	GAANNNNTTC	2 cut(s)	8, 744
PfeI	GAWTC	5 cut(s)	60, 252, 427, 556, 647
PflMI	CCANNNNNTGG	1 cut(s)	865
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	3 cut(s)	841, 1036, 1066
PpsI	GAGTC	3 cut(s)	841, 1036, 1066
PpuMI	RGGWCCY	1 cut(s)	932
PsiI	TTATAA	1 cut(s)	602
Psp124BI	GAGCTC	2 cut(s)	800, 1092
Psp1406I	AACGTT	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	932
PspFI	CCCAGC	2 cut(s)	450, 791
PspN4I	GGNNCC	2 cut(s)	585, 933
PspPI	GGNCC	2 cut(s)	329, 932
PspPPI	RGGWCCY	1 cut(s)	932
PsrI	GAACNNNNNNTAC	2 cut(s)	215, 247
PsuI	RGATCY	1 cut(s)	341
SacI	GAGCTC	2 cut(s)	800, 1092
SaqAI	TTAA	2 cut(s)	306, 1080
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	3 cut(s)	243, 341, 492
Sau96I	GGNCC	2 cut(s)	329, 932
SchI	GAGTC	3 cut(s)	841, 1036, 1067
SduI	GDGCHC	2 cut(s)	800, 1092
SfaNI	GCATC	4 cut(s)	59, 319, 627, 778
SfcI	CTRYAG	2 cut(s)	667, 777
SinI	GGWCC	2 cut(s)	329, 932
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	3 cut(s)	80, 596, 662
SsiI	CCGC	4 cut(s)	169, 339, 843, 999
SspI	AATATT	1 cut(s)	908
SspMI	CTAG	1 cut(s)	1093
SstI	GAGCTC	2 cut(s)	800, 1092
StyI	CCWWGG	1 cut(s)	1008
TaaI	ACNGT	2 cut(s)	466, 697
TaiI	ACGT	5 cut(s)	102, 180, 660, 723, 997
TaqI	TCGA	5 cut(s)	63, 69, 461, 705, 1040
TaqII	GACCGA	1 cut(s)	346
TasI	AATT	3 cut(s)	80, 596, 662
TfiI	GAWTC	5 cut(s)	60, 252, 427, 556, 647
Tru1I	TTAA	2 cut(s)	306, 1080
Tru9I	TTAA	2 cut(s)	306, 1080
TscAI	CASTG	4 cut(s)	421, 480, 553, 658
TseFI	GTSAC	4 cut(s)	367, 412, 542, 653
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	4 cut(s)	367, 412, 542, 653
TspDTI	ATGAA	5 cut(s)	17, 188, 343, 504, 1002
TspRI	CASTG	4 cut(s)	421, 480, 553, 658
Van91I	CCANNNNNTGG	1 cut(s)	865
VpaK11BI	GGWCC	2 cut(s)	329, 932
XapI	RAATTY	1 cut(s)	596
XmnI	GAANNNNTTC	2 cut(s)	8, 744
XspI	CTAG	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.