Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Forward (+)

9764737 .. 9767610

Gene Structure 2874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG125800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGGCCTCGATATTCTCATCGAATTGTGTTCAACAGTACTAAACCTAGAGAAATGGAAATGAAGAAGTTTCTATTGGTTGCTGCTCTTTCACTTGCTTTGGTGATTGGGGTGGCTGAGAGCTTTGATTACCATGAGAGAGACTTGGCCTCCGAGGACAGCTTGTGGGATCTGTACGAGAGGTGGAGGAGCCACCACACGGTTTCTAGGAGCCTCGATGAGAAGCACAAGCGGTTCAATGTGTTCAAGGAGAATGTCAGGCATGTCCACAACACCAACAAAGAAGACAGGCCTTATAAGCTGAAGCTGAACATGTTTGCTGACATGACCAACCATGAGTTCAGGAGCGCTTATGCTGGTTCCAAGGTTAAGCATCATAGGATGCTCCGAGGGCAGCGAAGCGGTGATGGGGCCTTCAAGTACGCGAACGTTGACAGTGTCCCGCCGTCTGTTGACTGGAGAAAGAACGGTGCTGTCACGCCGGTTAAGGATCAAGGCCAATGTGGTAGTTGCTGGGCGTTTTCAACGGTTGTAGCTGTTGAGGGCATCAACCAGATTAAGACAAAGAACCTTGTTTCATTGTCAGAGCAAGAGTTGGTTGACTGTGACACTCAACAGAATCAAGGATGCAGTGGGGGGCTGATGGAGTTGGCGTTCGAGTTCATCAAACAAAAGGGTGGCCTAACAACCGAGACAAACTACCCTTACAGAGCAACTGATTCAACATGCAATGCTGCAAAGGAAAACAGTCCAGTAGTGTCAATTGATGGTCATGAGTCGGTGCCTGCTAATAATGAAGATGCATTGCTCAAAGCAGCTGCAAACCAACCTATCGCTGTTGCCATAGACGCCGGAGGTTCTGATTTTCAATTCTACTCGGAGGTAAACTTACTAATAACAAACTATATTCACTTTAACAAATCGGATAAAAAATTAAAAAGTAGGGAAACTACTTATAAGTCAGACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

323

Amino Acids

36.43

Weight (kDa)

7.69

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	59 - 114	3.6e-14	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	147 - 294	2.8e-54	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	297, 957
AccB1I	GGYRCC	1 cut(s)	781
AccII	CGCG	1 cut(s)	425
AciI	CCGC	3 cut(s)	232, 402, 443
AclI	AACGTT	1 cut(s)	429
AclWI	GGATC	2 cut(s)	177, 498
AcuI	CTGAAG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	849
AfaI	GTAC	3 cut(s)	40, 176, 422
AfeI	AGCGCT	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	7 cut(s)	34, 238, 247, 418, 525, 723, 869
AjuI	GAANNNNNNNTTGG	4 cut(s)	59, 91, 323, 355
AloI	GAACNNNNNNTCC	2 cut(s)	638, 670
AluBI	AGCT	6 cut(s)	123, 162, 301, 307, 536, 818
AluI	AGCT	6 cut(s)	123, 162, 301, 307, 536, 818
Alw26I	GTCTC	2 cut(s)	135, 686
AlwI	GGATC	2 cut(s)	177, 498
Aor51HI	AGCGCT	1 cut(s)	349
AoxI	GGCC	6 cut(s)	5, 147, 290, 411, 496, 679
ApeKI	GCWGC	5 cut(s)	83, 394, 734, 815, 818
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	5, 411
AsuHPI	GGTGA	2 cut(s)	115, 416
BanI	GGYRCC	1 cut(s)	781
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	5 cut(s)	70, 406, 721, 805, 827
BccI	CCATC	3 cut(s)	401, 637, 761
BceAI	ACGGC	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	135, 686
BfaI	CTAG	2 cut(s)	48, 207
BfoI	RGCGCY	1 cut(s)	351
BisI	GCNGC	5 cut(s)	84, 395, 735, 816, 819
BlsI	GCNGC	5 cut(s)	85, 396, 736, 817, 820
BmcAI	AGTACT	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	5, 411
BmiI	GGNNCC	6 cut(s)	6, 191, 212, 361, 412, 783
BmsI	GCATC	5 cut(s)	372, 382, 555, 617, 790
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	478
BsaHI	GRCGYC	1 cut(s)	849
BsaJI	CCNNGG	3 cut(s)	153, 363, 388
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 638, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	481
Bse1I	ACTGG	2 cut(s)	461, 752
Bse3DI	GCAATG	2 cut(s)	736, 803
BseDI	CCNNGG	3 cut(s)	153, 363, 388
BseGI	GGATG	2 cut(s)	387, 632
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	2 cut(s)	736, 803
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	461, 752
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	5 cut(s)	70, 406, 721, 805, 827
BseYI	CCCAGC	1 cut(s)	513
Bsh1236I	CGCG	1 cut(s)	425
BshFI	GGCC	6 cut(s)	7, 149, 292, 413, 498, 681
BshNI	GGYRCC	1 cut(s)	781
BsiSI	CCGG	2 cut(s)	482, 852
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	135, 686
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	6 cut(s)	7, 149, 292, 413, 498, 681
Bsp143I	GATC	2 cut(s)	169, 490
BspACI	CCGC	3 cut(s)	232, 402, 443
BspANI	GGCC	6 cut(s)	7, 149, 292, 413, 498, 681
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	425
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	6 cut(s)	6, 191, 212, 361, 412, 783
BspPI	GGATC	2 cut(s)	177, 498
BspT107I	GGYRCC	1 cut(s)	781
BsrDI	GCAATG	2 cut(s)	736, 803
BsrFI	RCCGGY	1 cut(s)	481
BsrI	ACTGG	2 cut(s)	461, 752
BssAI	RCCGGY	1 cut(s)	481
BssECI	CCNNGG	3 cut(s)	153, 363, 388
BssMI	GATC	2 cut(s)	169, 490
BssNI	GRCGYC	1 cut(s)	849
BssT1I	CCWWGG	1 cut(s)	363
Bst4CI	ACNGT	7 cut(s)	38, 202, 437, 470, 529, 605, 749
BstACI	GRCGYC	1 cut(s)	849
BstC8I	GCNNGC	1 cut(s)	786
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	387, 632
BstFNI	CGCG	1 cut(s)	425
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	2 cut(s)	172, 493
BstMAI	GTCTC	2 cut(s)	135, 686
BstMBI	GATC	2 cut(s)	169, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 391, 848
BstNSI	RCATGY	3 cut(s)	266, 316, 729
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	5 cut(s)	70, 406, 721, 805, 827
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	6 cut(s)	7, 149, 292, 413, 498, 681
BtsCI	GGATG	2 cut(s)	387, 632
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	2 cut(s)	442, 637
Cac8I	GCNNGC	1 cut(s)	786
CciI	TCATGA	1 cut(s)	772
CfoI	GCGC	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	5, 411
CseI	GACGC	1 cut(s)	857
Csp6I	GTAC	3 cut(s)	39, 175, 421
CviAII	CATG	7 cut(s)	134, 263, 313, 325, 335, 726, 773
CviQI	GTAC	3 cut(s)	39, 175, 421
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	171, 492
DpnII	GATC	2 cut(s)	169, 490
Eco130I	CCWWGG	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	292
Eco47III	AGCGCT	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	323
EcoO109I	RGGNCCY	2 cut(s)	5, 411
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	7 cut(s)	137, 266, 316, 328, 338, 729, 776
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	7 cut(s)	133, 262, 312, 324, 334, 725, 772
FauI	CCCGC	1 cut(s)	450
Fnu4HI	GCNGC	5 cut(s)	84, 395, 735, 816, 819
FokI	GGATG	2 cut(s)	394, 639
Fsp4HI	GCNGC	5 cut(s)	84, 395, 735, 816, 819
FspBI	CTAG	2 cut(s)	48, 207
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	5 cut(s)	84, 395, 735, 816, 819
GsaI	CCCAGC	1 cut(s)	517
GsuI	CTGGAG	1 cut(s)	478
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	6 cut(s)	7, 149, 292, 413, 498, 681
HapII	CCGG	2 cut(s)	482, 852
HgaI	GACGC	1 cut(s)	857
HhaI	GCGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	849
Hin1II	CATG	7 cut(s)	137, 266, 316, 328, 338, 729, 776
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	3 cut(s)	433, 454, 601
HindII	GTYRAC	3 cut(s)	433, 454, 601
HinfI	GANTC	3 cut(s)	619, 719, 776
HpaII	CCGG	2 cut(s)	482, 852
HphI	GGTGA	2 cut(s)	115, 416
Hpy166II	GTNNAC	5 cut(s)	268, 433, 454, 601, 886
Hpy188I	TCNGA	8 cut(s)	154, 389, 586, 862, 880, 925, 964, 971
Hpy188III	TCNNGA	2 cut(s)	343, 773
Hpy8I	GTNNAC	5 cut(s)	268, 433, 454, 601, 886
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	7 cut(s)	38, 202, 437, 470, 529, 605, 749
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	5 cut(s)	630, 729, 737, 803, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 391, 848
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	429
Hsp92I	GRCGYC	1 cut(s)	849
Hsp92II	CATG	7 cut(s)	137, 266, 316, 328, 338, 729, 776
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	169, 490
LmnI	GCTCC	4 cut(s)	189, 210, 345, 390
Lsp1109I	GCAGC	5 cut(s)	70, 406, 721, 805, 827
LweI	GCATC	5 cut(s)	372, 382, 555, 617, 790
MaeI	CTAG	2 cut(s)	48, 207
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	475, 605
MalI	GATC	2 cut(s)	171, 492
MboI	GATC	2 cut(s)	169, 490
MboII	GAAGA	3 cut(s)	76, 296, 809
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	4 cut(s)	24, 762, 869, 932
MlyI	GAGTC	1 cut(s)	785
Mph1103I	ATGCAT	1 cut(s)	805
MseI	TTAA	5 cut(s)	369, 486, 558, 915, 935
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	2 cut(s)	482, 852
MunI	CAATTG	1 cut(s)	762
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	3 cut(s)	298, 391, 848
NdeII	GATC	2 cut(s)	169, 490
NlaIII	CATG	7 cut(s)	137, 266, 316, 328, 338, 729, 776
NlaIV	GGNNCC	6 cut(s)	6, 191, 212, 361, 412, 783
NmuCI	GTSAC	2 cut(s)	475, 605
NsiI	ATGCAT	1 cut(s)	805
NspI	RCATGY	3 cut(s)	266, 316, 729
PagI	TCATGA	1 cut(s)	772
PceI	AGGCCT	1 cut(s)	292
PciI	ACATGT	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	619, 719
PflFI	GACNNNGTC	1 cut(s)	437
PkrI	GCNGC	5 cut(s)	85, 396, 736, 817, 820
PleI	GAGTC	1 cut(s)	784
PpsI	GAGTC	1 cut(s)	784
PscI	ACATGT	1 cut(s)	312
PsiI	TTATAA	2 cut(s)	297, 957
Psp1406I	AACGTT	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	513
PspN4I	GGNNCC	6 cut(s)	6, 191, 212, 361, 412, 783
PspPI	GGNCC	2 cut(s)	5, 411
PsuI	RGATCY	1 cut(s)	169
PsyI	GACNNNGTC	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	3 cut(s)	40, 176, 422
RsaNI	GTAC	3 cut(s)	39, 175, 421
SaqAI	TTAA	5 cut(s)	369, 486, 558, 915, 935
SatI	GCNGC	5 cut(s)	84, 395, 735, 816, 819
Sau3AI	GATC	2 cut(s)	169, 490
Sau96I	GGNCC	2 cut(s)	5, 411
ScaI	AGTACT	1 cut(s)	40
SchI	GAGTC	1 cut(s)	785
SfaNI	GCATC	5 cut(s)	372, 382, 555, 617, 790
Sse9I	AATT	4 cut(s)	24, 762, 869, 932
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	3 cut(s)	232, 402, 443
SspMI	CTAG	2 cut(s)	48, 207
StuI	AGGCCT	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	7 cut(s)	38, 202, 437, 470, 529, 605, 749
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	4 cut(s)	10, 22, 216, 657
TasI	AATT	4 cut(s)	24, 762, 869, 932
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	2 cut(s)	619, 719
Tru1I	TTAA	5 cut(s)	369, 486, 558, 915, 935
Tru9I	TTAA	5 cut(s)	369, 486, 558, 915, 935
TscAI	CASTG	2 cut(s)	442, 637
TseFI	GTSAC	2 cut(s)	475, 605
TseI	GCWGC	5 cut(s)	83, 394, 734, 815, 818
Tsp45I	GTSAC	2 cut(s)	475, 605
TspDTI	ATGAA	4 cut(s)	77, 567, 652, 810
TspRI	CASTG	2 cut(s)	442, 637
Tth111I	GACNNNGTC	1 cut(s)	437
XceI	RCATGY	3 cut(s)	266, 316, 729
XspI	CTAG	2 cut(s)	48, 207
ZrmI	AGTACT	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.