Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Reverse (-)

25481686 .. 25483461

Gene Structure 1776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G240900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAGGAAGTTCATCTTGGTTGCTCTATTTTTGGCTCTGGTTATTGGCCTGGCTGAGAGCTTTGAGTTTCAGGAGAAGGACCTGGCCTCTGAAGAGAGTCTCTGGGGCTTGTATGAGGGGTGGAGGAGCCACCATACAATTTCCCATGACCTCGGAGAGAAGGAAAAGCGCTTCAATGTCTTCAAGGAGAATGTGAAGCATGTGCACAAGGTGAACCAGATGAGCAAGCCTTACAAGCTGAAGCTGAACAAGTTTGCAGACATGACCAACCATGAGTTTGTGAGCTCCTATGCTGGCTCAAAGGTTAGCCACTACAGGTCTTTGCATGGCAGCCGAAGGGAAACTGCCTTCACACATGAGAACACTGACAATCTTCCACCAAATGTTGATTGGAGGAAGAATGGAGCAGTCACTGGAGTTAAAGACCAAGGCAAATGCGGTAGCTGCTGGGCATTTTCAACTGTAGTTGCAGTGGAGGGTATCAATCAAATCAAAACCAAGGCCCTAGTCTCTCTGTCTGAGCAAGAGCTGGTTGATTGCAATAGAGACCCCAACGAAGGGTGCGACGGTGGTTTGATGGAAAAGGCATTTGATTTCATAAAGAAAAATGGCGGCATAACAACAGAGCAGAACTACCCATACAGAGCCAGTGATGGGCCTTGTGACTCAACCAAGATGATGAATGCTCCTCTGGTGCAAATTGATGGCTACGAAAACGTACCCGAAAACAACGAAAATGCCTTGATGAAAGCTGTTGCAAACCAACCTGTATCTGTTGCAATAGATGCTGGTGGCAGAGACTTCCAATTCTACTCAGAAGGTGTGTTTAATGGGGACTGTGGAACAGAGCTAAACCATGGCGTAGCAGTTGTGGGGTATGGAGCAACTCTGGATGGGACCAAGTACTGGATTGTGAAGAACTCTTGGGGAGAAGAGTGGGGAGAGAAGGGATACATAAGGATCCAACGTGGAGTTGATGCAGAAGAAGGGCTGTGTGGAATTGCAAAAGATCCCTCTTACCCCATGAAGTCTTCCCCAAGCAACACAAAAAGAAGAAGCTCCTCCTCCTTCAAGGATGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

362

Amino Acids

40.22

Weight (kDa)

5.98

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	906
AciI	CCGC	2 cut(s)	438, 612
AclWI	GGATC	3 cut(s)	955, 968, 1004
AcuI	CTGAAG	2 cut(s)	111, 260
AdeI	CACNNNGTG	1 cut(s)	211
AfaI	GTAC	2 cut(s)	720, 905
AfeI	AGCGCT	1 cut(s)	170
AfiI	CCNNNNNNNGG	4 cut(s)	557, 558, 654, 906
AgsI	TTSAA	4 cut(s)	175, 184, 459, 1072
AjnI	CCWGG	2 cut(s)	48, 81
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	9 cut(s)	60, 238, 244, 285, 444, 529, 752, 850, 1059
AluI	AGCT	9 cut(s)	60, 238, 244, 285, 444, 529, 752, 850, 1059
Alw21I	GWGCWC	2 cut(s)	207, 287
Alw26I	GTCTC	4 cut(s)	104, 514, 540, 792
Alw44I	GTGCAC	1 cut(s)	203
AlwI	GGATC	3 cut(s)	955, 968, 1004
AlwNI	CAGNNNCTG	1 cut(s)	413
Aor51HI	AGCGCT	1 cut(s)	170
AoxI	GGCC	4 cut(s)	46, 84, 501, 656
ApaLI	GTGCAC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	330, 444
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	4 cut(s)	79, 502, 656, 897
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	2 cut(s)	79, 897
BaeGI	GKGCMC	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	960
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	172, 1023
Bbv12I	GWGCWC	2 cut(s)	207, 287
BbvI	GCAGC	2 cut(s)	342, 431
BccI	CCATC	4 cut(s)	571, 647, 698, 887
BciT130I	CCWGG	2 cut(s)	50, 83
BciVI	GTATCC	1 cut(s)	944
BcoDI	GTCTC	4 cut(s)	104, 514, 540, 792
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	2 cut(s)	313, 462
BfoI	RGCGCY	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	944
BisI	GCNGC	3 cut(s)	331, 445, 613
BlsI	GCNGC	3 cut(s)	332, 446, 614
BmcAI	AGTACT	1 cut(s)	905
Bme1390I	CCNGG	2 cut(s)	50, 83
Bme18I	GGWCC	2 cut(s)	79, 897
BmgT120I	GGNCC	4 cut(s)	79, 502, 656, 897
BmiI	GGNNCC	3 cut(s)	128, 898, 962
BmrFI	CCNGG	2 cut(s)	50, 83
BmsI	GCATC	2 cut(s)	775, 967
BpiI	GAAGAC	2 cut(s)	172, 1023
BpmI	CTGGAG	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	540
BsaJI	CCNNGG	4 cut(s)	151, 427, 498, 856
Bsc4I	CCNNNNNNNGG	4 cut(s)	557, 558, 654, 906
Bse1I	ACTGG	3 cut(s)	418, 648, 911
BseBI	CCWGG	2 cut(s)	50, 83
BseDI	CCNNGG	4 cut(s)	151, 427, 498, 856
BseGI	GGATG	2 cut(s)	898, 1081
BseLI	CCNNNNNNNGG	4 cut(s)	557, 558, 654, 906
BseMII	CTCAG	3 cut(s)	45, 510, 828
BseNI	ACTGG	3 cut(s)	418, 648, 911
BseRI	GAGGAG	4 cut(s)	139, 678, 1051, 1054
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	342, 431
BseYI	CCCAGC	1 cut(s)	447
BshFI	GGCC	4 cut(s)	48, 86, 503, 658
BsiHKAI	GWGCWC	2 cut(s)	207, 287
BslFI	GGGAC	2 cut(s)	848, 910
BslI	CCNNNNNNNGG	4 cut(s)	557, 558, 654, 906
BsmAI	GTCTC	4 cut(s)	104, 514, 540, 792
BsmFI	GGGAC	2 cut(s)	848, 910
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	4 cut(s)	48, 86, 503, 658
Bso31I	GGTCTC	1 cut(s)	540
Bsp1286I	GDGCHC	2 cut(s)	207, 287
Bsp143I	GATC	2 cut(s)	960, 1009
Bsp19I	CCATGG	1 cut(s)	856
BspACI	CCGC	2 cut(s)	438, 612
BspANI	GGCC	4 cut(s)	48, 86, 503, 658
BspCNI	CTCAG	3 cut(s)	46, 511, 827
BspLI	GGNNCC	3 cut(s)	128, 898, 962
BspPI	GGATC	3 cut(s)	955, 968, 1004
BspTNI	GGTCTC	1 cut(s)	540
BsrI	ACTGG	3 cut(s)	418, 648, 911
BssECI	CCNNGG	4 cut(s)	151, 427, 498, 856
BssMI	GATC	2 cut(s)	960, 1009
BssT1I	CCWWGG	3 cut(s)	427, 498, 856
Bst2UI	CCWGG	2 cut(s)	50, 83
Bst4CI	ACNGT	3 cut(s)	463, 569, 839
Bst6I	CTCTTC	2 cut(s)	87, 927
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstC8I	GCNNGC	2 cut(s)	227, 295
BstDEI	CTNAG	3 cut(s)	54, 519, 814
BstDSI	CCRYGG	1 cut(s)	856
BstF5I	GGATG	2 cut(s)	898, 1081
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	2 cut(s)	963, 1012
BstMAI	GTCTC	4 cut(s)	104, 514, 540, 792
BstMBI	GATC	2 cut(s)	960, 1009
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 444, 785
BstNI	CCWGG	2 cut(s)	50, 83
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	48, 81
BstSFI	CTRYAG	2 cut(s)	313, 462
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	342, 431
BstV2I	GAAGAC	2 cut(s)	172, 1023
BstX2I	RGATCY	2 cut(s)	960, 1009
BstYI	RGATCY	2 cut(s)	960, 1009
BsuI	GTATCC	1 cut(s)	944
BsuRI	GGCC	4 cut(s)	48, 86, 503, 658
BtgI	CCRYGG	1 cut(s)	856
BtsCI	GGATG	2 cut(s)	898, 1081
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	4 cut(s)	363, 411, 477, 655
Cac8I	GCNNGC	2 cut(s)	227, 295
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	4 cut(s)	79, 502, 656, 897
Csp6I	GTAC	2 cut(s)	719, 904
CviAII	CATG	8 cut(s)	146, 200, 262, 272, 326, 356, 857, 1024
CviQI	GTAC	2 cut(s)	719, 904
DdeI	CTNAG	3 cut(s)	54, 519, 814
DpnI	GATC	2 cut(s)	962, 1011
DpnII	GATC	2 cut(s)	960, 1009
DraIII	CACNNNGTG	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	87, 927
EarI	CTCTTC	2 cut(s)	87, 927
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	3 cut(s)	427, 498, 856
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	540
Eco47I	GGWCC	2 cut(s)	79, 897
Eco47III	AGCGCT	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	111, 260
EcoICRI	GAGCTC	1 cut(s)	285
EcoO109I	RGGNCCY	2 cut(s)	79, 502
EcoRII	CCWGG	2 cut(s)	48, 81
EcoT14I	CCWWGG	3 cut(s)	427, 498, 856
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	3 cut(s)	427, 498, 856
FaeI	CATG	8 cut(s)	149, 203, 265, 275, 329, 359, 860, 1027
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	848, 910
FatI	CATG	8 cut(s)	145, 199, 261, 271, 325, 355, 856, 1023
Fnu4HI	GCNGC	3 cut(s)	331, 445, 613
FokI	GGATG	1 cut(s)	905
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	331, 445, 613
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	3 cut(s)	331, 445, 613
GsaI	CCCAGC	1 cut(s)	451
GsuI	CTGGAG	1 cut(s)	435
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	4 cut(s)	48, 86, 503, 658
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	8 cut(s)	149, 203, 265, 275, 329, 359, 860, 1027
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	97, 665
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	2 cut(s)	205, 214
Hpy188I	TCNGA	4 cut(s)	91, 155, 520, 817
Hpy188III	TCNNGA	2 cut(s)	71, 890
Hpy8I	GTNNAC	2 cut(s)	205, 214
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	9 cut(s)	70, 154, 330, 358, 551, 812, 940, 980, 1078
HpyCH4III	ACNGT	3 cut(s)	463, 569, 839
HpyCH4IV	ACGT	2 cut(s)	717, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 444, 785
HpyF3I	CTNAG	3 cut(s)	54, 519, 814
HpySE526I	ACGT	2 cut(s)	717, 967
Hsp92II	CATG	8 cut(s)	149, 203, 265, 275, 329, 359, 860, 1027
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	960, 1009
LmnI	GCTCC	6 cut(s)	126, 290, 404, 691, 881, 1064
Lsp1109I	GCAGC	2 cut(s)	342, 431
LweI	GCATC	2 cut(s)	775, 967
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	2 cut(s)	717, 967
MaeIII	GTNAC	2 cut(s)	409, 662
MalI	GATC	2 cut(s)	962, 1011
MboI	GATC	2 cut(s)	960, 1009
MboII	GAAGA	9 cut(s)	104, 172, 365, 409, 928, 944, 995, 1023, 1065
MflI	RGATCY	2 cut(s)	960, 1009
MhlI	GDGCHC	2 cut(s)	207, 287
MluCI	AATT	4 cut(s)	138, 699, 806, 999
MlyI	GAGTC	2 cut(s)	106, 659
MmeI	TCCRAC	1 cut(s)	988
MseI	TTAA	2 cut(s)	420, 828
MspR9I	CCNGG	2 cut(s)	50, 83
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	2 cut(s)	50, 83
MwoI	GCNNNNNNNGC	3 cut(s)	235, 444, 785
NcoI	CCATGG	1 cut(s)	856
NdeII	GATC	2 cut(s)	960, 1009
NlaIII	CATG	8 cut(s)	149, 203, 265, 275, 329, 359, 860, 1027
NlaIV	GGNNCC	3 cut(s)	128, 898, 962
NmuCI	GTSAC	2 cut(s)	409, 662
NspI	RCATGY	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PctI	GAATGC	1 cut(s)	688
PflMI	CCANNNNNTGG	1 cut(s)	906
PkrI	GCNGC	3 cut(s)	332, 446, 614
PleI	GAGTC	2 cut(s)	105, 659
PpsI	GAGTC	2 cut(s)	105, 659
PpuMI	RGGWCCY	1 cut(s)	79
Psp124BI	GAGCTC	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	48, 81
PspFI	CCCAGC	1 cut(s)	447
PspGI	CCWGG	2 cut(s)	48, 81
PspN4I	GGNNCC	3 cut(s)	128, 898, 962
PspPI	GGNCC	4 cut(s)	79, 502, 656, 897
PspPPI	RGGWCCY	1 cut(s)	79
PsrI	GAACNNNNNNTAC	2 cut(s)	623, 655
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	2 cut(s)	960, 1009
RsaI	GTAC	2 cut(s)	720, 905
RsaNI	GTAC	2 cut(s)	719, 904
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	420, 828
SatI	GCNGC	3 cut(s)	331, 445, 613
Sau3AI	GATC	2 cut(s)	960, 1009
Sau96I	GGNCC	4 cut(s)	79, 502, 656, 897
ScaI	AGTACT	1 cut(s)	905
SchI	GAGTC	2 cut(s)	106, 659
ScrFI	CCNGG	2 cut(s)	50, 83
SduI	GDGCHC	2 cut(s)	207, 287
SfaNI	GCATC	2 cut(s)	775, 967
SfcI	CTRYAG	2 cut(s)	313, 462
SinI	GGWCC	2 cut(s)	79, 897
Sse9I	AATT	4 cut(s)	138, 699, 806, 999
SsiI	CCGC	2 cut(s)	438, 612
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	48, 81
StyI	CCWWGG	3 cut(s)	427, 498, 856
TaaI	ACNGT	3 cut(s)	463, 569, 839
TaiI	ACGT	2 cut(s)	720, 970
TasI	AATT	4 cut(s)	138, 699, 806, 999
TatI	WGTACW	1 cut(s)	903
TauI	GCSGC	1 cut(s)	615
Tru1I	TTAA	2 cut(s)	420, 828
Tru9I	TTAA	2 cut(s)	420, 828
TscAI	CASTG	4 cut(s)	370, 418, 477, 655
TseFI	GTSAC	2 cut(s)	409, 662
TseI	GCWGC	2 cut(s)	330, 444
Tsp45I	GTSAC	2 cut(s)	409, 662
TspDTI	ATGAA	4 cut(s)	586, 695, 761, 1040
TspRI	CASTG	4 cut(s)	370, 418, 477, 655
Van91I	CCANNNNNTGG	1 cut(s)	906
VneI	GTGCAC	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	79, 897
XceI	RCATGY	1 cut(s)	203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	387
XspI	CTAG	1 cut(s)	506
ZrmI	AGTACT	1 cut(s)	905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.