Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Forward (+)

9123078 .. 9126977

Gene Structure 3900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG122900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAAATGAAGAAGTTTCTATTGGCTGCTGCTCTTTCACTTGCTTTGGTGATTGGGGTGGCTGAGAGCTTTGATTACCATGAGAGAGACTTGGCCTCCGAGGACAGCTTGTGGGATCTGTACGAGAGGTGGAGGAGCCACCACACGGTTTCGAGGAGCCTCGATGAGAAGCACAAGCGGTTCAATGTGTTCAAGGAGAATGTCAGGCATGTCCACAACACCAACAAAGAAGACAAGCCTTATAAGCTGAAGCTGAACAAGTTTGCTGACATGACCAACCATGAGTTCAGGAGCGCTTATGCTGGCTCCAAGGTTAAGCATCATAGGATGCTCCGAGGGCAGCGAAGCGGTGATGGGGCCTTCAGGTACGCGAACGTTGACAGTGTCCCGCCGTCTGTTGACTGGAGAAAGAACGGTGCTGTCACGCCGGTTAAGGATCAAGGCCAATGTGGTAGTTGCTGGGCGTTTTCAACGGTTGTAGCTGTTGAGGGCATCAACCAGATTAAGACAAAGAACCTTGTTTCATTGTCAGAGCAAGAGTTGGTTGACTGTGACACTCAACAGAATCAAGGATGCAGTGGGGGGCTGATGGAGTTGGCGTTCGAGTTCATCAAACAAAAGGGTGGCCTAACAACCGAGACAAACTACCCTTACAGAGCAACTGATTCAACATGCAATGCTGCAAAGGAAAACAGTCCAGTAGTGTCAATTGATGGTCATGAGTCGGTGCCTGCTAATAATGAAGATGCATTGCTCAAAGCAGCTGCAAACCAACCTATCGCTGTTGCCATAGACGCCGGAGGTTCTGATTTTCAATTCTACTCGGAGGTAAACTTACTAATAACAAACTATATTCACTTTAACAAATCAGATAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

293

Amino Acids

32.82

Weight (kDa)

6.6

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	41 - 96	3.3e-15	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	129 - 276	2.3e-54	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	727
AccII	CGCG	1 cut(s)	371
AciI	CCGC	3 cut(s)	178, 348, 389
AclI	AACGTT	1 cut(s)	375
AclWI	GGATC	2 cut(s)	123, 444
AcuI	CTGAAG	2 cut(s)	269, 346
AcyI	GRCGYC	1 cut(s)	795
AfaI	GTAC	2 cut(s)	122, 368
AfeI	AGCGCT	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	5 cut(s)	184, 193, 471, 669, 815
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 269, 301
AloI	GAACNNNNNNTCC	2 cut(s)	584, 616
AluBI	AGCT	6 cut(s)	69, 108, 247, 253, 482, 764
AluI	AGCT	6 cut(s)	69, 108, 247, 253, 482, 764
Alw26I	GTCTC	2 cut(s)	81, 632
AlwI	GGATC	2 cut(s)	123, 444
Aor51HI	AGCGCT	1 cut(s)	295
AoxI	GGCC	4 cut(s)	93, 357, 442, 625
ApeKI	GCWGC	6 cut(s)	26, 29, 340, 680, 761, 764
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	61, 362
BanI	GGYRCC	1 cut(s)	727
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	6 cut(s)	13, 16, 352, 667, 751, 773
BccI	CCATC	3 cut(s)	347, 583, 707
BceAI	ACGGC	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	81, 632
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	6 cut(s)	27, 30, 341, 681, 762, 765
BlsI	GCNGC	6 cut(s)	28, 31, 342, 682, 763, 766
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	5 cut(s)	137, 158, 307, 358, 729
BmsI	GCATC	5 cut(s)	318, 328, 501, 563, 736
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	424
BsaHI	GRCGYC	1 cut(s)	795
BsaJI	CCNNGG	3 cut(s)	99, 309, 334
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 584, 614
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	2 cut(s)	407, 698
Bse3DI	GCAATG	2 cut(s)	682, 749
BseDI	CCNNGG	3 cut(s)	99, 309, 334
BseGI	GGATG	2 cut(s)	333, 578
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMI	GCAATG	2 cut(s)	682, 749
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	407, 698
BseRI	GAGGAG	2 cut(s)	148, 169
BseXI	GCAGC	6 cut(s)	13, 16, 352, 667, 751, 773
BseYI	CCCAGC	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	4 cut(s)	95, 359, 444, 627
BshNI	GGYRCC	1 cut(s)	727
BsiSI	CCGG	2 cut(s)	428, 798
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	81, 632
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	4 cut(s)	95, 359, 444, 627
Bsp143I	GATC	2 cut(s)	115, 436
BspACI	CCGC	3 cut(s)	178, 348, 389
BspANI	GGCC	4 cut(s)	95, 359, 444, 627
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	371
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	5 cut(s)	137, 158, 307, 358, 729
BspPI	GGATC	2 cut(s)	123, 444
BspT107I	GGYRCC	1 cut(s)	727
BsrDI	GCAATG	2 cut(s)	682, 749
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	407, 698
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	3 cut(s)	99, 309, 334
BssMI	GATC	2 cut(s)	115, 436
BssNI	GRCGYC	1 cut(s)	795
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	6 cut(s)	148, 383, 416, 475, 551, 695
BstACI	GRCGYC	1 cut(s)	795
BstC8I	GCNNGC	2 cut(s)	304, 732
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	333, 578
BstFNI	CGCG	1 cut(s)	371
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	118, 439
BstMAI	GTCTC	2 cut(s)	81, 632
BstMBI	GATC	2 cut(s)	115, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	244, 337, 794
BstNSI	RCATGY	2 cut(s)	212, 675
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	6 cut(s)	13, 16, 352, 667, 751, 773
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	4 cut(s)	95, 359, 444, 627
BtsCI	GGATG	2 cut(s)	333, 578
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	2 cut(s)	388, 583
Cac8I	GCNNGC	2 cut(s)	304, 732
CciI	TCATGA	1 cut(s)	718
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	357
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	2 cut(s)	121, 367
CviAII	CATG	6 cut(s)	80, 209, 271, 281, 672, 719
CviQI	GTAC	2 cut(s)	121, 367
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	117, 438
DpnII	GATC	2 cut(s)	115, 436
Eco130I	CCWWGG	1 cut(s)	309
Eco47III	AGCGCT	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	269, 346
EcoO109I	RGGNCCY	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	6 cut(s)	83, 212, 274, 284, 675, 722
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	6 cut(s)	79, 208, 270, 280, 671, 718
FauI	CCCGC	1 cut(s)	396
Fnu4HI	GCNGC	6 cut(s)	27, 30, 341, 681, 762, 765
FokI	GGATG	2 cut(s)	340, 585
Fsp4HI	GCNGC	6 cut(s)	27, 30, 341, 681, 762, 765
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	6 cut(s)	27, 30, 341, 681, 762, 765
GsaI	CCCAGC	1 cut(s)	463
GsuI	CTGGAG	1 cut(s)	424
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	4 cut(s)	95, 359, 444, 627
HapII	CCGG	2 cut(s)	428, 798
HgaI	GACGC	1 cut(s)	803
HhaI	GCGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	795
Hin1II	CATG	6 cut(s)	83, 212, 274, 284, 675, 722
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	3 cut(s)	379, 400, 547
HindII	GTYRAC	3 cut(s)	379, 400, 547
HinfI	GANTC	3 cut(s)	565, 665, 722
HpaII	CCGG	2 cut(s)	428, 798
HphI	GGTGA	2 cut(s)	61, 362
Hpy166II	GTNNAC	5 cut(s)	214, 379, 400, 547, 832
Hpy188I	TCNGA	6 cut(s)	100, 335, 532, 808, 826, 871
Hpy188III	TCNNGA	2 cut(s)	289, 719
Hpy8I	GTNNAC	5 cut(s)	214, 379, 400, 547, 832
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	6 cut(s)	148, 383, 416, 475, 551, 695
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	5 cut(s)	576, 675, 683, 749, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	244, 337, 794
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	795
Hsp92II	CATG	6 cut(s)	83, 212, 274, 284, 675, 722
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	115, 436
LmnI	GCTCC	5 cut(s)	135, 156, 291, 311, 336
Lsp1109I	GCAGC	6 cut(s)	13, 16, 352, 667, 751, 773
LweI	GCATC	5 cut(s)	318, 328, 501, 563, 736
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	2 cut(s)	421, 551
MalI	GATC	2 cut(s)	117, 438
MboI	GATC	2 cut(s)	115, 436
MboII	GAAGA	3 cut(s)	22, 242, 755
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	2 cut(s)	708, 815
MlyI	GAGTC	1 cut(s)	731
Mph1103I	ATGCAT	1 cut(s)	751
MseI	TTAA	4 cut(s)	315, 432, 504, 861
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	2 cut(s)	428, 798
MunI	CAATTG	1 cut(s)	708
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	244, 337, 794
NdeII	GATC	2 cut(s)	115, 436
NlaIII	CATG	6 cut(s)	83, 212, 274, 284, 675, 722
NlaIV	GGNNCC	5 cut(s)	137, 158, 307, 358, 729
NmuCI	GTSAC	2 cut(s)	421, 551
NsiI	ATGCAT	1 cut(s)	751
NspI	RCATGY	2 cut(s)	212, 675
PagI	TCATGA	1 cut(s)	718
PfeI	GAWTC	2 cut(s)	565, 665
PflFI	GACNNNGTC	1 cut(s)	383
PkrI	GCNGC	6 cut(s)	28, 31, 342, 682, 763, 766
PleI	GAGTC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	730
PsiI	TTATAA	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	459
PspN4I	GGNNCC	5 cut(s)	137, 158, 307, 358, 729
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	115
PsyI	GACNNNGTC	1 cut(s)	383
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	2 cut(s)	122, 368
RsaNI	GTAC	2 cut(s)	121, 367
SaqAI	TTAA	4 cut(s)	315, 432, 504, 861
SatI	GCNGC	6 cut(s)	27, 30, 341, 681, 762, 765
Sau3AI	GATC	2 cut(s)	115, 436
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	1 cut(s)	731
SfaNI	GCATC	5 cut(s)	318, 328, 501, 563, 736
Sse9I	AATT	2 cut(s)	708, 815
SsiI	CCGC	3 cut(s)	178, 348, 389
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	6 cut(s)	148, 383, 416, 475, 551, 695
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	3 cut(s)	152, 162, 603
TasI	AATT	2 cut(s)	708, 815
TfiI	GAWTC	2 cut(s)	565, 665
Tru1I	TTAA	4 cut(s)	315, 432, 504, 861
Tru9I	TTAA	4 cut(s)	315, 432, 504, 861
TscAI	CASTG	2 cut(s)	388, 583
TseFI	GTSAC	2 cut(s)	421, 551
TseI	GCWGC	6 cut(s)	26, 29, 340, 680, 761, 764
Tsp45I	GTSAC	2 cut(s)	421, 551
TspDTI	ATGAA	4 cut(s)	23, 513, 598, 756
TspRI	CASTG	2 cut(s)	388, 583
Tth111I	GACNNNGTC	1 cut(s)	383
XceI	RCATGY	2 cut(s)	212, 675
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.