Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Reverse (-)

30209251 .. 30211176

Gene Structure 1926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1161000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGACTAAGTTTGTTTGGGTTGCGCTTGCTCTCTCGCTCGCTTTGGTTATGGGGGTTTCTGAGAGTTTCGACTACCACGAGAAGGACTTGGCCTCGGAGGAGAGCTTGTGGGGTTTGTACGAGAGGTGGAGGAGCCATCACACGGTTTCTAGGAGCCTCGACGAGAAGAACAAGCGGTTCAATGTGTTTAAGGAGAATGTCAAGCATGTTCACAACACTAACAAAGGTGATAAGCCTTACAAGCTGAAGCTTAACAAGTTTGCTGACATGACCAACCATGAGTTCAGGAGTGTTTACGCTGGTTCGAAGGTTAAGCACCATAGAATGTTCCAAGGGCAGCGTGCTGATACAGGCTTTCGGTATGGAAATGTTGGGAGTGTCCCGCCATCTGTTGATTGGAGAAAGAATGGAGCTGTCACTCCCGTTAAGGATCAAGGCCATTGTGGTAGTTGCTGGGCATTTTCAACTGTTGTAGCTGTTGAGGGCGTCAATCAAATTAAGACAAAAAATCTGGTTTCGTTGTCTGAACAAGAGTTGGTCGATTGTGACACGGAACAAAACCATGGATGCAATGGAGGTCTAATGGAACTGGCAATGGAGTTCATCAAACAAAAGGGAGGCCTGACAGCCGAAACTAATTACCCTTACCGAGCAGCAGATTCAACGTGTAATGTTGCAAAGGAAAACGCTCCGGCGGTGTCCATTGATGGCCATGAGAGTGTGCCTGCTAATGACGAGGATGCATTGCTCAAAGCAGCTGCAAACCAACCTATTTCTGTCGCCATTGATGCTGGAGGTTCCGATTTCCAATTCTACCATGAGGGGGTATTTGATGGAAAATGCGGCACAGAGCTTGATCACGGAGTAGCAGTTGTTGGCTACGGAACAACACTTGACGGAACCAAGTATTGGATAGTAAAGAACTCATGGGGAACCGAGTGGGGAGAGGAGGGTTACATAAGGATGCAGCGCGGCGTCTCTGCTAAGGAAGGGATATGTGGAATAGCAATGGAGGCTTCGTATCCCGTCAAGAACTCATCGACAAACCCTCAAGCAGCACCTACCTCAAACCCTAAGGATGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

363

Amino Acids

39.87

Weight (kDa)

6.02

Isoelectric Point (pI)

24.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 95	3.7e-15	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	127 - 343	1.4e-83	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	909
AccII	CGCG	1 cut(s)	972
AciI	CCGC	5 cut(s)	175, 383, 695, 843, 972
AclWI	GGATC	1 cut(s)	438
AcoI	YGGCCR	1 cut(s)	709
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	2 cut(s)	486, 975
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	4 cut(s)	82, 142, 823, 909
AflIII	ACRYGT	1 cut(s)	665
AgsI	TTSAA	3 cut(s)	181, 465, 663
AjuI	GAANNNNNNNTTGG	4 cut(s)	266, 298, 892, 924
AluBI	AGCT	7 cut(s)	105, 244, 250, 413, 476, 758, 853
AluI	AGCT	7 cut(s)	105, 244, 250, 413, 476, 758, 853
Alw26I	GTCTC	1 cut(s)	982
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	4 cut(s)	90, 436, 619, 709
ApeKI	GCWGC	6 cut(s)	337, 653, 755, 758, 967, 1055
AspLEI	GCGC	2 cut(s)	25, 972
AsuHPI	GGTGA	1 cut(s)	239
AsuII	TTCGAA	1 cut(s)	305
AxyI	CCTNAGG	1 cut(s)	1074
BalI	TGGCCA	1 cut(s)	711
BauI	CACGAG	1 cut(s)	77
BbvI	GCAGC	6 cut(s)	349, 665, 745, 767, 979, 1067
BccI	CCATC	4 cut(s)	144, 394, 701, 827
BciVI	GTATCC	1 cut(s)	1032
BclI	TGATCA	1 cut(s)	856
BcoDI	GTCTC	1 cut(s)	982
BfaI	CTAG	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	1032
BisI	GCNGC	8 cut(s)	338, 654, 756, 759, 844, 968, 973, 1056
BlsI	GCNGC	8 cut(s)	339, 655, 757, 760, 845, 969, 974, 1057
BmiI	GGNNCC	5 cut(s)	134, 155, 799, 901, 934
BmsI	GCATC	4 cut(s)	557, 730, 778, 954
BpmI	CTGGAG	1 cut(s)	813
Bpu10I	CCTNAGC	1 cut(s)	984
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	1035
BsaHI	GRCGYC	2 cut(s)	486, 975
BsaJI	CCNNGG	3 cut(s)	93, 331, 562
BsaXI	ACNNNNNCTCC	6 cut(s)	92, 122, 855, 885, 1004, 1034
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 142, 823, 909
Bse1I	ACTGG	1 cut(s)	594
Bse21I	CCTNAGG	1 cut(s)	1074
Bse3DI	GCAATG	4 cut(s)	577, 600, 743, 1014
BseDI	CCNNGG	3 cut(s)	93, 331, 562
BseGI	GGATG	4 cut(s)	572, 745, 969, 1084
BseLI	CCNNNNNNNGG	4 cut(s)	82, 142, 823, 909
BseMI	GCAATG	4 cut(s)	577, 600, 743, 1014
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	3 cut(s)	113, 145, 962
BseXI	GCAGC	6 cut(s)	349, 665, 745, 767, 979, 1067
BseYI	CCCAGC	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	972
BshFI	GGCC	4 cut(s)	92, 438, 621, 711
BsiSI	CCGG	1 cut(s)	692
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	4 cut(s)	82, 142, 823, 909
BsmAI	GTCTC	1 cut(s)	982
BsmBI	CGTCTC	1 cut(s)	982
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	4 cut(s)	92, 438, 621, 711
Bsp119I	TTCGAA	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	430, 856
Bsp19I	CCATGG	1 cut(s)	562
BspACI	CCGC	5 cut(s)	175, 383, 695, 843, 972
BspANI	GGCC	4 cut(s)	92, 438, 621, 711
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	972
BspLI	GGNNCC	5 cut(s)	134, 155, 799, 901, 934
BspPI	GGATC	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	305
BsrDI	GCAATG	4 cut(s)	577, 600, 743, 1014
BsrI	ACTGG	1 cut(s)	594
BssECI	CCNNGG	3 cut(s)	93, 331, 562
BssMI	GATC	2 cut(s)	430, 856
BssNI	GRCGYC	2 cut(s)	486, 975
BssSI	CACGAG	1 cut(s)	77
BssT1I	CCWWGG	2 cut(s)	331, 562
Bst2BI	CACGAG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	145, 469
BstACI	GRCGYC	2 cut(s)	486, 975
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	4 cut(s)	27, 39, 342, 726
BstDEI	CTNAG	4 cut(s)	6, 60, 984, 1074
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	4 cut(s)	572, 745, 969, 1084
BstFNI	CGCG	1 cut(s)	972
BstHHI	GCGC	2 cut(s)	25, 972
BstKTI	GATC	2 cut(s)	433, 859
BstMAI	GTCTC	1 cut(s)	982
BstMBI	GATC	2 cut(s)	430, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 788, 1013
BstNSI	RCATGY	1 cut(s)	209
BstUI	CGCG	1 cut(s)	972
BstV1I	GCAGC	6 cut(s)	349, 665, 745, 767, 979, 1067
Bsu36I	CCTNAGG	1 cut(s)	1074
BsuI	GTATCC	1 cut(s)	1032
BsuRI	GGCC	4 cut(s)	92, 438, 621, 711
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	4 cut(s)	572, 745, 969, 1084
Cac8I	GCNNGC	4 cut(s)	27, 39, 342, 726
CfoI	GCGC	2 cut(s)	25, 972
CseI	GACGC	2 cut(s)	475, 964
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	7 cut(s)	206, 268, 278, 563, 713, 818, 927
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	4 cut(s)	6, 60, 984, 1074
DpnI	GATC	2 cut(s)	432, 858
DpnII	GATC	2 cut(s)	430, 856
EaeI	YGGCCR	1 cut(s)	709
Eco130I	CCWWGG	2 cut(s)	331, 562
Eco147I	AGGCCT	1 cut(s)	621
Eco57I	CTGAAG	1 cut(s)	266
Eco81I	CCTNAGG	1 cut(s)	1074
EcoT14I	CCWWGG	2 cut(s)	331, 562
EcoT22I	ATGCAT	1 cut(s)	745
ErhI	CCWWGG	2 cut(s)	331, 562
Esp3I	CGTCTC	1 cut(s)	982
FaeI	CATG	7 cut(s)	209, 271, 281, 566, 716, 821, 930
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	7 cut(s)	205, 267, 277, 562, 712, 817, 926
FauI	CCCGC	1 cut(s)	390
FbaI	TGATCA	1 cut(s)	856
Fnu4HI	GCNGC	8 cut(s)	338, 654, 756, 759, 844, 968, 973, 1056
FokI	GGATG	3 cut(s)	579, 752, 976
Fsp4HI	GCNGC	8 cut(s)	338, 654, 756, 759, 844, 968, 973, 1056
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	2 cut(s)	24, 971
GluI	GCNGC	8 cut(s)	338, 654, 756, 759, 844, 968, 973, 1056
GsaI	CCCAGC	1 cut(s)	457
GsuI	CTGGAG	1 cut(s)	813
HaeIII	GGCC	4 cut(s)	92, 438, 621, 711
HapII	CCGG	1 cut(s)	692
HgaI	GACGC	2 cut(s)	475, 964
HhaI	GCGC	2 cut(s)	25, 972
Hin1I	GRCGYC	2 cut(s)	486, 975
Hin1II	CATG	7 cut(s)	209, 271, 281, 566, 716, 821, 930
Hin6I	GCGC	2 cut(s)	23, 970
HinP1I	GCGC	2 cut(s)	23, 970
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	1 cut(s)	659
HpaII	CCGG	1 cut(s)	692
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	211, 295
Hpy188I	TCNGA	4 cut(s)	61, 97, 526, 802
Hpy188III	TCNNGA	2 cut(s)	286, 1030
Hpy8I	GTNNAC	2 cut(s)	211, 295
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	76, 301, 983
HpyCH4III	ACNGT	2 cut(s)	145, 469
HpyCH4IV	ACGT	1 cut(s)	665
HpyCH4V	TGCA	5 cut(s)	570, 677, 743, 761, 967
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 788, 1013
HpyF3I	CTNAG	4 cut(s)	6, 60, 984, 1074
HpySE526I	ACGT	1 cut(s)	665
Hsp92I	GRCGYC	2 cut(s)	486, 975
Hsp92II	CATG	7 cut(s)	209, 271, 281, 566, 716, 821, 930
HspAI	GCGC	2 cut(s)	23, 970
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	2 cut(s)	430, 856
LmnI	GCTCC	4 cut(s)	132, 153, 410, 694
Lsp1109I	GCAGC	6 cut(s)	349, 665, 745, 767, 979, 1067
LweI	GCATC	4 cut(s)	557, 730, 778, 954
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	665
MaeIII	GTNAC	3 cut(s)	415, 545, 953
MalI	GATC	2 cut(s)	432, 858
MboI	GATC	2 cut(s)	430, 856
MboII	GAAGA	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	711
MluCI	AATT	3 cut(s)	495, 637, 809
MluNI	TGGCCA	1 cut(s)	711
Mox20I	TGGCCA	1 cut(s)	711
Mph1103I	ATGCAT	1 cut(s)	745
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	5 cut(s)	189, 252, 312, 426, 498
MslI	CAYNNNNRTG	2 cut(s)	717, 962
Msp20I	TGGCCA	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	1 cut(s)	692
MvnI	CGCG	1 cut(s)	972
MwoI	GCNNNNNNNGC	3 cut(s)	241, 788, 1013
NcoI	CCATGG	1 cut(s)	562
NdeII	GATC	2 cut(s)	430, 856
NlaIII	CATG	7 cut(s)	209, 271, 281, 566, 716, 821, 930
NlaIV	GGNNCC	5 cut(s)	134, 155, 799, 901, 934
NmuCI	GTSAC	2 cut(s)	415, 545
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	1 cut(s)	209
NspV	TTCGAA	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	659
PflMI	CCANNNNNTGG	1 cut(s)	909
PkrI	GCNGC	8 cut(s)	339, 655, 757, 760, 845, 969, 974, 1057
PspFI	CCCAGC	1 cut(s)	453
PspN4I	GGNNCC	5 cut(s)	134, 155, 799, 901, 934
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	2 cut(s)	717, 962
SaqAI	TTAA	5 cut(s)	189, 252, 312, 426, 498
SatI	GCNGC	8 cut(s)	338, 654, 756, 759, 844, 968, 973, 1056
Sau3AI	GATC	2 cut(s)	430, 856
SfaNI	GCATC	4 cut(s)	557, 730, 778, 954
SfuI	TTCGAA	1 cut(s)	305
SmiMI	CAYNNNNRTG	2 cut(s)	717, 962
SmlI	CTYRAG	1 cut(s)	1050
SmoI	CTYRAG	1 cut(s)	1050
Sse9I	AATT	3 cut(s)	495, 637, 809
SseBI	AGGCCT	1 cut(s)	621
SsiI	CCGC	5 cut(s)	175, 383, 695, 843, 972
SspMI	CTAG	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	621
StyI	CCWWGG	2 cut(s)	331, 562
TaaI	ACNGT	2 cut(s)	145, 469
TaiI	ACGT	1 cut(s)	668
TaqI	TCGA	5 cut(s)	69, 159, 305, 540, 1040
TasI	AATT	3 cut(s)	495, 637, 809
TauI	GCSGC	2 cut(s)	846, 975
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	5 cut(s)	189, 252, 312, 426, 498
Tru9I	TTAA	5 cut(s)	189, 252, 312, 426, 498
TseFI	GTSAC	2 cut(s)	415, 545
TseI	GCWGC	6 cut(s)	337, 653, 755, 758, 967, 1055
Tsp45I	GTSAC	2 cut(s)	415, 545
TspDTI	ATGAA	1 cut(s)	592
TspGWI	ACGGA	4 cut(s)	566, 876, 897, 912
Van91I	CCANNNNNTGG	1 cut(s)	909
XceI	RCATGY	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	2 cut(s)	393, 569
XspI	CTAG	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.