Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041316.1

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Forward (+)

2 .. 1666

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041316.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgaccaaccatgagttcaggagcgcttatgctggttccaaggttaagcatcataggatgctccgagggcagcgaagcggtgatggggccttcaggtacgcgaacgttggcagtatcccgccgtctgttgactggagaaagaacggtgctgtcacgccggttaaggatcaaggccaatgtggtagttgctgggcgttttcaacggttgtagctgttgagggcatcaaccagattaagacaaagaaccttgtttcattgtcagagcaagagttggttgactgtgacactcaacagaatcaaggatgcagtggggggctgatggagttggcgttcgagttcatcagacaaaagggtggcctaacaaccgagacaaactacccttacagagcaactgattcaacatgcaatgctgcaaaggaaaacagtccagtagtgtcaattgatggtcatgagtcggtgcctgctaataatgaagatgcattgctcaaagcagctgcaaaccaacctatcgctgttgccatagacgccggaggttctgattttcaattctactcggagggtggagatgtgggaactcaatatcgatctggaatatactactacaacgaaacgcaggctcgatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

208

Amino Acids

22.59

Weight (kDa)

5.57

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	457
AccII	CGCG	1 cut(s)	101
AciI	CCGC	2 cut(s)	78, 119
AclI	AACGTT	1 cut(s)	105
AclWI	GGATC	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	1 cut(s)	98
AfeI	AGCGCT	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	201, 399, 545
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
AluBI	AGCT	2 cut(s)	212, 494
AluI	AGCT	2 cut(s)	212, 494
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	174
Aor51HI	AGCGCT	1 cut(s)	25
AoxI	GGCC	3 cut(s)	87, 172, 355
ApeKI	GCWGC	4 cut(s)	70, 410, 491, 494
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	457
BbvI	GCAGC	4 cut(s)	82, 397, 481, 503
BccI	CCATC	3 cut(s)	77, 313, 437
BceAI	ACGGC	1 cut(s)	106
BciVI	GTATCC	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	27
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	4 cut(s)	71, 411, 492, 495
BlsI	GCNGC	4 cut(s)	72, 412, 493, 496
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	3 cut(s)	37, 88, 459
BmsI	GCATC	5 cut(s)	48, 58, 231, 293, 466
BpmI	CTGGAG	1 cut(s)	154
Bsa29I	ATCGAT	1 cut(s)	583
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	39, 64
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	137, 428
Bse3DI	GCAATG	2 cut(s)	412, 479
BseCI	ATCGAT	1 cut(s)	583
BseDI	CCNNGG	2 cut(s)	39, 64
BseGI	GGATG	2 cut(s)	63, 308
BseMI	GCAATG	2 cut(s)	412, 479
BseNI	ACTGG	2 cut(s)	137, 428
BseXI	GCAGC	4 cut(s)	82, 397, 481, 503
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	3 cut(s)	89, 174, 357
BshNI	GGYRCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	583
BsiSI	CCGG	2 cut(s)	158, 528
BsmAI	GTCTC	1 cut(s)	362
BsnI	GGCC	3 cut(s)	89, 174, 357
Bsp143I	GATC	2 cut(s)	166, 584
BspACI	CCGC	2 cut(s)	78, 119
BspANI	GGCC	3 cut(s)	89, 174, 357
BspDI	ATCGAT	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	3 cut(s)	37, 88, 459
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	457
BsrDI	GCAATG	2 cut(s)	412, 479
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	137, 428
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	39, 64
BssMI	GATC	2 cut(s)	166, 584
BssNI	GRCGYC	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	4 cut(s)	146, 205, 281, 425
BstACI	GRCGYC	1 cut(s)	525
BstC8I	GCNNGC	2 cut(s)	462, 615
BstF5I	GGATG	2 cut(s)	63, 308
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	2 cut(s)	169, 587
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	2 cut(s)	166, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 524
BstNSI	RCATGY	1 cut(s)	405
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	4 cut(s)	82, 397, 481, 503
Bsu15I	ATCGAT	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	3 cut(s)	89, 174, 357
BsuTUI	ATCGAT	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	63, 308
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	462, 615
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	87
ClaI	ATCGAT	1 cut(s)	583
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	3 cut(s)	11, 402, 449
CviJI	RGCY	7 cut(s)	89, 174, 212, 316, 357, 494, 617
CviKI_1	RGCY	7 cut(s)	89, 174, 212, 316, 357, 494, 617
CviQI	GTAC	1 cut(s)	97
DpnI	GATC	2 cut(s)	168, 586
DpnII	GATC	2 cut(s)	166, 584
Eco130I	CCWWGG	1 cut(s)	39
Eco47III	AGCGCT	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	14, 405, 452
FaiI	YATR	7 cut(s)	12, 30, 54, 403, 450, 521, 595
FatI	CATG	3 cut(s)	10, 401, 448
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	4 cut(s)	71, 411, 492, 495
FokI	GGATG	2 cut(s)	70, 315
Fsp4HI	GCNGC	4 cut(s)	71, 411, 492, 495
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	4 cut(s)	71, 411, 492, 495
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	89, 174, 357
HapII	CCGG	2 cut(s)	158, 528
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	3 cut(s)	14, 405, 452
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	2 cut(s)	130, 277
HindII	GTYRAC	2 cut(s)	130, 277
HinfI	GANTC	3 cut(s)	295, 395, 452
HpaII	CCGG	2 cut(s)	158, 528
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	130, 277
Hpy188I	TCNGA	5 cut(s)	65, 262, 344, 538, 556
Hpy188III	TCNNGA	3 cut(s)	19, 449, 588
Hpy8I	GTNNAC	2 cut(s)	130, 277
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	4 cut(s)	146, 205, 281, 425
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	5 cut(s)	306, 405, 413, 479, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 524
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	3 cut(s)	14, 405, 452
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	166, 584
LmnI	GCTCC	2 cut(s)	21, 66
Lsp1109I	GCAGC	4 cut(s)	82, 397, 481, 503
LweI	GCATC	5 cut(s)	48, 58, 231, 293, 466
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	151, 281
MalI	GATC	2 cut(s)	168, 586
MboI	GATC	2 cut(s)	166, 584
MboII	GAAGA	1 cut(s)	485
MfeI	CAATTG	1 cut(s)	438
MluCI	AATT	2 cut(s)	438, 545
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	4 cut(s)	59, 211, 524, 550
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	3 cut(s)	45, 162, 234
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	2 cut(s)	158, 528
MunI	CAATTG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	67, 524
NdeII	GATC	2 cut(s)	166, 584
NlaIII	CATG	3 cut(s)	14, 405, 452
NlaIV	GGNNCC	3 cut(s)	37, 88, 459
NmuCI	GTSAC	2 cut(s)	151, 281
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	1 cut(s)	405
PagI	TCATGA	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	295, 395
PkrI	GCNGC	4 cut(s)	72, 412, 493, 496
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
Psp1406I	AACGTT	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	37, 88, 459
PspPI	GGNCC	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	45, 162, 234
SatI	GCNGC	4 cut(s)	71, 411, 492, 495
Sau3AI	GATC	2 cut(s)	166, 584
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	461
SetI	ASST	8 cut(s)	45, 98, 108, 214, 249, 496, 508, 535
SfaNI	GCATC	5 cut(s)	48, 58, 231, 293, 466
Sse9I	AATT	2 cut(s)	438, 545
SsiI	CCGC	2 cut(s)	78, 119
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	4 cut(s)	146, 205, 281, 425
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	333, 583, 619
TasI	AATT	2 cut(s)	438, 545
TfiI	GAWTC	2 cut(s)	295, 395
Tru1I	TTAA	3 cut(s)	45, 162, 234
Tru9I	TTAA	3 cut(s)	45, 162, 234
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	2 cut(s)	151, 281
TseI	GCWGC	4 cut(s)	70, 410, 491, 494
Tsp45I	GTSAC	2 cut(s)	151, 281
TspDTI	ATGAA	3 cut(s)	243, 328, 486
TspRI	CASTG	1 cut(s)	313
XceI	RCATGY	1 cut(s)	405
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.