Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Forward (+)

7562936 .. 7565611

Gene Structure 2676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1105500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAACTTGGGGAAGTTTATTTTGGTTGCCCTAGCTCTAGCTCTGGTCCTTGTCCTGGTTGAGAGCTTTGAATTTCAGGAGAAGGACTTGGCTTCTGAAGAGAGTATGTGGGATTTGTATGAGAGGTGGAGGAGCCACCACACAATCTCCCACGACCTTGGCGAGAAGCGAAAGCGCTTCAATGTTTTCAAGGGGAACGTGAAGCATGTGCACAAGGTGAACCAGATGAGCAAACCCTACAAGCTCAAGCTGAACAAGTTTGCAGACATGACGAACCATGAGTTTGCGAGCTCCTATGCTGGCTCGAAGGTTAGCCACTATAGATCACTGCATGGCAGCAGAAGGGCTACTGGCTTCACACATGGGATGACCGACGATCTTCCGGCAAGTGTTGATTGGAGGAAGAGTGGAGCTGTCACTGGAGTTAAAGACCAAGGCAAATGTGGTAGCTGCTGGGCATTTTCAACTGTAGTTGCAGTGGAGGGCATCAATCAGATCAAAACAAAGCAGCTAGTTTCTCTGTCTGAGCAAGAGCTGGTTGATTGCAACAGAGATCCAAACGAAGGGTGCGAAGGTGGATTGATGGAAAAAGCATTTGAGTTCATCAAGAAAAATTGTGGAATAACAACGGAGCAAAACTACCCTTACAGAGCCAGTGATAATCCTTGTGACTCATCCAAGATGATGAATTCTCCTCTGGTGCAAATCGATGGTTATGAAAACGTACCTGAAAACGATGAGAATGCCTTGATGAAAGCTGTTGCAAACCAACCTGTGTCAGTTGCACTTGATGCTGGTGGTAAAGACTTCCAATTCTACGCGGAGGGTGTGATGAATGGAGACTGTGGAACAGAACTGAATCATGGAGTGGCAGTAGTGGGATATGGAGAGACTCAAGATGGAACCAAGTACTGGATTGTGAAGAATTCATGGGGAGTTGAATGGGGAGAGAAAGGTTACTTGAGGATTCAACGAGGAGTTGATAAAGAAGGAGGGATGTGTGGAATTGCTTTGGAGCCCTCTTACCCTATGAAATCATCACCAAACAACACCAGAAGAAGCTCATTCAAGGATGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

361

Amino Acids

40.17

Weight (kDa)

6.23

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 95	2.7e-14	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	127 - 344	1.4e-84	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	912
AccII	CGCG	1 cut(s)	821
AciI	CCGC	1 cut(s)	821
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	4 cut(s)	71, 688, 925, 1076
AcuI	CTGAAG	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	217
AfaI	GTAC	2 cut(s)	726, 911
AfeI	AGCGCT	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	55, 563, 912
AgsI	TTSAA	7 cut(s)	71, 181, 190, 465, 941, 971, 1069
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
Alw21I	GWGCWC	2 cut(s)	213, 293
Alw26I	GTCTC	2 cut(s)	834, 884
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	548
Aor51HI	AGCGCT	1 cut(s)	176
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	3 cut(s)	336, 450, 508
ApoI	RAATTY	4 cut(s)	71, 688, 925, 1076
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	229, 1032
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	293, 1020
Bbv12I	GWGCWC	2 cut(s)	213, 293
BbvI	GCAGC	3 cut(s)	348, 437, 520
BccI	CCATC	3 cut(s)	577, 704, 893
BcgI	CGANNNNNNTGC	2 cut(s)	725, 759
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	834, 884
BfaI	CTAG	3 cut(s)	32, 38, 512
BfmI	CTRYAG	2 cut(s)	319, 468
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	3 cut(s)	337, 451, 509
BlsI	GCNGC	3 cut(s)	338, 452, 510
BmcAI	AGTACT	1 cut(s)	911
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	3 cut(s)	134, 904, 1017
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	495, 781
BpmI	CTGGAG	1 cut(s)	441
BpuEI	CTTGAG	3 cut(s)	230, 879, 982
Bsa29I	ATCGAT	1 cut(s)	708
BsaJI	CCNNGG	2 cut(s)	157, 433
BsaXI	ACNNNNNCTCC	6 cut(s)	131, 161, 391, 421, 858, 888
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 563, 912
Bse1I	ACTGG	4 cut(s)	355, 424, 654, 917
BseBI	CCWGG	1 cut(s)	56
BseCI	ATCGAT	1 cut(s)	708
BseDI	CCNNGG	2 cut(s)	157, 433
BseGI	GGATG	4 cut(s)	372, 674, 1002, 1078
BseLI	CCNNNNNNNGG	3 cut(s)	55, 563, 912
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	4 cut(s)	355, 424, 654, 917
BseRI	GAGGAG	3 cut(s)	145, 684, 990
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	348, 437, 520
BseYI	CCCAGC	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	821
BshVI	ATCGAT	1 cut(s)	708
BsiHKAI	GWGCWC	2 cut(s)	213, 293
BsiSI	CCGG	1 cut(s)	383
BslI	CCNNNNNNNGG	3 cut(s)	55, 563, 912
BsmAI	GTCTC	2 cut(s)	834, 884
BsmI	GAATGC	1 cut(s)	748
Bsp1286I	GDGCHC	3 cut(s)	213, 293, 1020
Bsp143I	GATC	4 cut(s)	323, 376, 495, 553
BspACI	CCGC	1 cut(s)	821
BspCNI	CTCAG	1 cut(s)	517
BspDI	ATCGAT	1 cut(s)	708
BspFNI	CGCG	1 cut(s)	821
BspLI	GGNNCC	3 cut(s)	134, 904, 1017
BspPI	GGATC	1 cut(s)	548
BsrI	ACTGG	4 cut(s)	355, 424, 654, 917
BssECI	CCNNGG	2 cut(s)	157, 433
BssMI	GATC	4 cut(s)	323, 376, 495, 553
BssT1I	CCWWGG	2 cut(s)	157, 433
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	469, 845
Bst6I	CTCTTC	2 cut(s)	93, 398
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstC8I	GCNNGC	2 cut(s)	289, 301
BstDEI	CTNAG	1 cut(s)	525
BstF5I	GGATG	4 cut(s)	372, 674, 1002, 1078
BstFNI	CGCG	1 cut(s)	821
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	4 cut(s)	326, 379, 498, 556
BstMAI	GTCTC	2 cut(s)	834, 884
BstMBI	GATC	4 cut(s)	323, 376, 495, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	791
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	2 cut(s)	319, 468
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	821
BstV1I	GCAGC	3 cut(s)	348, 437, 520
BstX2I	RGATCY	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	553
Bsu15I	ATCGAT	1 cut(s)	708
BsuTUI	ATCGAT	1 cut(s)	708
BtsCI	GGATG	4 cut(s)	372, 674, 1002, 1078
BtsI	GCAGTG	2 cut(s)	326, 483
BtsIMutI	CAGTG	4 cut(s)	326, 417, 483, 661
Cac8I	GCNNGC	2 cut(s)	289, 301
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	708
Csp6I	GTAC	2 cut(s)	725, 910
CviAII	CATG	7 cut(s)	206, 268, 278, 332, 362, 863, 930
CviQI	GTAC	2 cut(s)	725, 910
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	4 cut(s)	325, 378, 497, 555
DpnII	GATC	4 cut(s)	323, 376, 495, 553
DraIII	CACNNNGTG	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	93, 398
EarI	CTCTTC	2 cut(s)	93, 398
Ecl136II	GAGCTC	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	157, 433
Eco24I	GRGCYC	2 cut(s)	293, 1020
Eco47I	GGWCC	1 cut(s)	46
Eco47III	AGCGCT	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	291
EcoRI	GAATTC	2 cut(s)	688, 925
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	157, 433
EcoT38I	GRGCYC	2 cut(s)	293, 1020
ErhI	CCWWGG	2 cut(s)	157, 433
FaeI	CATG	7 cut(s)	209, 271, 281, 335, 365, 866, 933
FatI	CATG	7 cut(s)	205, 267, 277, 331, 361, 862, 929
Fnu4HI	GCNGC	3 cut(s)	337, 451, 509
FokI	GGATG	3 cut(s)	379, 661, 1009
FriOI	GRGCYC	2 cut(s)	293, 1020
Fsp4HI	GCNGC	3 cut(s)	337, 451, 509
FspBI	CTAG	3 cut(s)	32, 38, 512
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	3 cut(s)	337, 451, 509
GsaI	CCCAGC	1 cut(s)	457
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	178
HapII	CCGG	1 cut(s)	383
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	7 cut(s)	209, 271, 281, 335, 365, 866, 933
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	4 cut(s)	671, 859, 892, 967
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	2 cut(s)	229, 1032
Hpy166II	GTNNAC	2 cut(s)	211, 220
Hpy188I	TCNGA	3 cut(s)	97, 495, 526
Hpy188III	TCNNGA	3 cut(s)	77, 607, 896
Hpy8I	GTNNAC	2 cut(s)	211, 220
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	6 cut(s)	76, 301, 336, 557, 566, 983
HpyCH4III	ACNGT	2 cut(s)	469, 845
HpyCH4IV	ACGT	2 cut(s)	198, 723
HpyCH4V	TGCA	8 cut(s)	211, 263, 331, 476, 546, 703, 764, 785
HpyF10VI	GCNNNNNNNGC	1 cut(s)	791
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	2 cut(s)	198, 723
Hsp92II	CATG	7 cut(s)	209, 271, 281, 335, 365, 866, 933
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	323, 376, 495, 553
LmnI	GCTCC	5 cut(s)	132, 296, 410, 631, 1015
Lsp1109I	GCAGC	3 cut(s)	348, 437, 520
LweI	GCATC	2 cut(s)	495, 781
MaeI	CTAG	3 cut(s)	32, 38, 512
MaeII	ACGT	2 cut(s)	198, 723
MaeIII	GTNAC	3 cut(s)	415, 668, 956
MalI	GATC	4 cut(s)	325, 378, 497, 555
MboI	GATC	4 cut(s)	323, 376, 495, 553
MboII	GAAGA	5 cut(s)	110, 371, 415, 934, 1068
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	3 cut(s)	213, 293, 1020
MluCI	AATT	7 cut(s)	71, 613, 688, 812, 925, 1005, 1076
MlyI	GAGTC	2 cut(s)	665, 886
MseI	TTAA	1 cut(s)	426
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	748
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	821
MwoI	GCNNNNNNNGC	1 cut(s)	791
NdeII	GATC	4 cut(s)	323, 376, 495, 553
NlaIII	CATG	7 cut(s)	209, 271, 281, 335, 365, 866, 933
NlaIV	GGNNCC	3 cut(s)	134, 904, 1017
NmuCI	GTSAC	2 cut(s)	415, 668
NspI	RCATGY	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 567
PctI	GAATGC	1 cut(s)	748
PfeI	GAWTC	2 cut(s)	859, 967
PflMI	CCANNNNNTGG	1 cut(s)	912
PkrI	GCNGC	3 cut(s)	338, 452, 510
PleI	GAGTC	2 cut(s)	665, 886
PpsI	GAGTC	2 cut(s)	665, 886
Psp124BI	GAGCTC	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	134, 904, 1017
PspPI	GGNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	2 cut(s)	726, 911
RsaNI	GTAC	2 cut(s)	725, 910
SacI	GAGCTC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	3 cut(s)	337, 451, 509
Sau3AI	GATC	4 cut(s)	323, 376, 495, 553
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	911
SchI	GAGTC	2 cut(s)	665, 886
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	3 cut(s)	213, 293, 1020
SfaNI	GCATC	2 cut(s)	495, 781
SfcI	CTRYAG	2 cut(s)	319, 468
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	3 cut(s)	245, 894, 961
SmoI	CTYRAG	3 cut(s)	245, 894, 961
Sse9I	AATT	7 cut(s)	71, 613, 688, 812, 925, 1005, 1076
SsiI	CCGC	1 cut(s)	821
SspMI	CTAG	3 cut(s)	32, 38, 512
SstI	GAGCTC	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	2 cut(s)	157, 433
TaaI	ACNGT	2 cut(s)	469, 845
TaiI	ACGT	2 cut(s)	201, 726
TaqI	TCGA	2 cut(s)	305, 708
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	7 cut(s)	71, 613, 688, 812, 925, 1005, 1076
TatI	WGTACW	1 cut(s)	909
TfiI	GAWTC	2 cut(s)	859, 967
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	4 cut(s)	333, 424, 483, 661
TseFI	GTSAC	2 cut(s)	415, 668
TseI	GCWGC	3 cut(s)	336, 450, 508
Tsp45I	GTSAC	2 cut(s)	415, 668
TspDTI	ATGAA	8 cut(s)	17, 592, 701, 732, 767, 848, 918, 1046
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	4 cut(s)	333, 424, 483, 661
Van91I	CCANNNNNTGG	1 cut(s)	912
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	4 cut(s)	71, 688, 925, 1076
XceI	RCATGY	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XspI	CTAG	3 cut(s)	32, 38, 512
ZrmI	AGTACT	1 cut(s)	911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.