Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Forward (+)

10966802 .. 10967717

Gene Structure 916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006841

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCGTTTCAACGTCTTCAAGGAGAACGTAAAGCACGTGCACAAGGTGAACCAGATGAGTAGGCCTTACAAGCTCAAGCTGAACAAGTTTGCGGACATGACCAACCACGAGTTTGTGAACTCCGGATATGCTAACTCAAAGGTTAGCCACTACCGGTCGTTGCATAGCAGCCGGAGGATAACCGGCTTCACGCATGATCAGACCGACAATCTGCCTCGAAGTGTTGACTGGTGGAAGAATGGAGCCGTCACCGGATGGCAGTGGAGGGCCTCAACAAAATTAAAACGAACCAGCTCGTCTCTGTCTGAGGAGGAGCTTGTTGACAGCAATAGAGATAACGAATGGTGTAGTGGCGGATTGAAGGACAACGCATTTGATTTCATAAAGAAAACTGGTGGAATCACAACAGAGCAGAACTACCCTTACAAAGCCGTTGATGAGTCTTGTGACTCATCCAGGATGATGAATGCTCCTCTGGTGGTAATTGATGGGTACGAAAACGTACCAGAAAATAACGAGAATGCCTTGATGAAAGCCGTGGCCAACCAACCTGTATCGGTTGCAATTGATGCTGATGGTCGAGATTTTCAGTTCTACAGAGAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

203

Amino Acids

23.18

Weight (kDa)

7.78

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	2 - 38	4.4e-11	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	81 - 201	4.7e-27	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	122
AciI	CCGC	2 cut(s)	92, 354
AcoI	YGGCCR	1 cut(s)	540
AcvI	CACGTG	1 cut(s)	37
AdeI	CACNNNGTG	1 cut(s)	46
AfaI	GTAC	2 cut(s)	494, 504
AgeI	ACCGGT	1 cut(s)	153
AgsI	TTSAA	3 cut(s)	10, 19, 361
AjnI	CCWGG	1 cut(s)	455
AluBI	AGCT	4 cut(s)	73, 79, 294, 316
AluI	AGCT	4 cut(s)	73, 79, 294, 316
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	303
Alw44I	GTGCAC	1 cut(s)	38
Aor13HI	TCCGGA	1 cut(s)	122
AoxI	GGCC	3 cut(s)	62, 267, 540
ApaLI	GTGCAC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	168
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AsiGI	ACCGGT	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	267
AsuHPI	GGTGA	2 cut(s)	58, 241
BaeGI	GKGCMC	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	542
BauI	CACGAG	1 cut(s)	107
BbrPI	CACGTG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	3 cut(s)	249, 482, 569
BceAI	ACGGC	3 cut(s)	230, 416, 521
BciT130I	CCWGG	1 cut(s)	457
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	595
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	457
BmsI	GCATC	1 cut(s)	559
BpiI	GAAGAC	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	537
BsaWI	WCCGGW	3 cut(s)	122, 153, 251
Bse118I	RCCGGY	2 cut(s)	153, 182
Bse1I	ACTGG	2 cut(s)	233, 397
BseAI	TCCGGA	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	3 cut(s)	260, 452, 465
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	233, 397
BseRI	GAGGAG	3 cut(s)	323, 326, 462
BseSI	GKGCMC	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	3 cut(s)	64, 269, 542
BshTI	ACCGGT	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	5 cut(s)	123, 154, 172, 183, 252
BsmAI	GTCTC	1 cut(s)	303
BsmBI	CGTCTC	1 cut(s)	303
BsmI	GAATGC	2 cut(s)	472, 526
BsnI	GGCC	3 cut(s)	64, 269, 542
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	2 cut(s)	92, 354
BspANI	GGCC	3 cut(s)	64, 269, 542
BspCNI	CTCAG	1 cut(s)	298
BspEI	TCCGGA	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	244
BsrFI	RCCGGY	2 cut(s)	153, 182
BsrI	ACTGG	2 cut(s)	233, 397
BssAI	RCCGGY	2 cut(s)	153, 182
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	107
Bst2BI	CACGAG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	457
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstBAI	YACGTR	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	537
BstF5I	GGATG	3 cut(s)	260, 452, 465
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	196
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 569
BstNI	CCWGG	1 cut(s)	457
BstSCI	CCNGG	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	595
BstSLI	GKGCMC	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	64, 269, 542
BtgI	CCRYGG	1 cut(s)	537
BtsCI	GGATG	3 cut(s)	260, 452, 465
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	266
Cfr10I	RCCGGY	2 cut(s)	153, 182
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	493, 503
CspAI	ACCGGT	1 cut(s)	153
CviAII	CATG	2 cut(s)	97, 194
CviQI	GTAC	2 cut(s)	493, 503
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DraIII	CACNNNGTG	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	369
Eco147I	AGGCCT	1 cut(s)	64
Eco72I	CACGTG	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	455
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	2 cut(s)	100, 197
FaiI	YATR	6 cut(s)	98, 129, 165, 195, 383, 607
FatI	CATG	2 cut(s)	96, 193
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	3 cut(s)	267, 439, 472
Fsp4HI	GCNGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	64, 269, 542
HapII	CCGG	5 cut(s)	123, 154, 172, 183, 252
Hin1II	CATG	2 cut(s)	100, 197
HincII	GTYRAC	2 cut(s)	226, 322
HindII	GTYRAC	2 cut(s)	226, 322
HinfI	GANTC	3 cut(s)	399, 440, 449
HpaII	CCGG	5 cut(s)	123, 154, 172, 183, 252
HphI	GGTGA	2 cut(s)	58, 241
Hpy166II	GTNNAC	5 cut(s)	40, 49, 118, 226, 322
Hpy188I	TCNGA	2 cut(s)	201, 307
Hpy188III	TCNNGA	2 cut(s)	123, 581
Hpy8I	GTNNAC	5 cut(s)	40, 49, 118, 226, 322
HpyAV	CCTTC	1 cut(s)	355
HpyCH4IV	ACGT	4 cut(s)	12, 27, 36, 501
HpyCH4V	TGCA	3 cut(s)	40, 163, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 569
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	4 cut(s)	12, 27, 36, 501
Hsp92II	CATG	2 cut(s)	100, 197
Kpn2I	TCCGGA	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	3 cut(s)	242, 313, 475
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	1 cut(s)	559
MaeII	ACGT	4 cut(s)	12, 27, 36, 501
MaeIII	GTNAC	2 cut(s)	247, 446
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	7, 247
MfeI	CAATTG	1 cut(s)	564
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	3 cut(s)	278, 483, 564
MluNI	TGGCCA	1 cut(s)	542
MlyI	GAGTC	2 cut(s)	443, 449
MnlI	CCTC	8 cut(s)	168, 225, 258, 280, 301, 304, 483, 595
Mox20I	TGGCCA	1 cut(s)	542
MroI	TCCGGA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	542
MspI	CCGG	5 cut(s)	123, 154, 172, 183, 252
MspR9I	CCNGG	1 cut(s)	457
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	2 cut(s)	472, 526
MvaI	CCWGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	2 cut(s)	70, 569
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	100, 197
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	247, 446
PceI	AGGCCT	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	2 cut(s)	472, 526
PfeI	GAWTC	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	455
PinAI	ACCGGT	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	2 cut(s)	443, 448
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	2 cut(s)	443, 448
Ppu21I	YACGTR	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	455
PspCI	CACGTG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	267
PsrI	GAACNNNNNNTAC	2 cut(s)	407, 439
RsaI	GTAC	2 cut(s)	494, 504
RsaNI	GTAC	2 cut(s)	493, 503
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	2 cut(s)	443, 449
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	1 cut(s)	595
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	3 cut(s)	278, 483, 564
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	2 cut(s)	92, 354
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	455
TaiI	ACGT	4 cut(s)	15, 30, 39, 504
TaqI	TCGA	2 cut(s)	217, 580
TaqII	GACCGA	1 cut(s)	218
TasI	AATT	3 cut(s)	278, 483, 564
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	2 cut(s)	247, 446
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	2 cut(s)	247, 446
TspDTI	ATGAA	3 cut(s)	370, 479, 545
TspRI	CASTG	1 cut(s)	266
VneI	GTGCAC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.