Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Reverse (-)

55012163 .. 55012978

Gene Structure 816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAGTAGGCCTTACAAGCTCAAGCTGAACGAGTTTGCGGACATGACCAACCACGAGTTTGTGAACTCCGGATATGCTAACTCAAAGGCTAGTCACTACCGGTTGTTGCATGGCAGCCGGAGGATAACCCGCTTCACGCATGATCAGACCGACAATCTTCCTCAGAGTGTTGACTGGAGGAAGAATGGAGCCGTCACCGGAGTTAAAGACCAAGGACAATGCGTTAGCTGCTGGGCATTTTCGACTATAGTGGCAGTGGAGGGCCTCAACAAAATTAAAACGAACCAGCTCGTCTCTTTGTCCGAGCAGGAGCTTGTTGACTGCAATAGAGATAACGAAGGGTGTAGTGGCAGATTGATGGACAACACATTTGATTTCATAAAGAAAACTGGTGGAATCACAACAGAGCAGAACTACCCTTACAAAGCCGTTGATGAGTCTTGTGACTCATCCAGGATGATGAATGCTCCTCTGGTGGTAATTGATGGGTACGAAAACGTACCAGAAAATAACCAGAATACCTTGATGAAAGCCGTGGCGAACCAACTGTATCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

185

Amino Acids

20.91

Weight (kDa)

6.42

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	53 - 181	4.4e-44	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	2 cut(s)	38, 130
AfaI	GTAC	2 cut(s)	491, 501
AgeI	ACCGGT	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	5 cut(s)	19, 25, 228, 289, 313
AluI	AGCT	5 cut(s)	19, 25, 228, 289, 313
Alw26I	GTCTC	1 cut(s)	298
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	2 cut(s)	8, 262
ApeKI	GCWGC	2 cut(s)	114, 228
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AsiGI	ACCGGT	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	187
BauI	CACGAG	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	126, 215
BccI	CCATC	2 cut(s)	352, 479
BceAI	ACGGC	3 cut(s)	176, 413, 518
BciT130I	CCWGG	1 cut(s)	454
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	2 cut(s)	115, 229
BlsI	GCNGC	2 cut(s)	116, 230
Bme1390I	CCNGG	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	454
BpmI	CTGGAG	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	211, 534
BsaWI	WCCGGW	3 cut(s)	68, 99, 197
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	2 cut(s)	179, 394
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	2 cut(s)	211, 534
BseGI	GGATG	2 cut(s)	449, 462
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	179, 394
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	2 cut(s)	126, 215
BseYI	CCCAGC	1 cut(s)	231
BshFI	GGCC	2 cut(s)	10, 264
BshTI	ACCGGT	1 cut(s)	99
BsiSI	CCGG	4 cut(s)	69, 100, 118, 198
BsmAI	GTCTC	1 cut(s)	298
BsmBI	CGTCTC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	2 cut(s)	10, 264
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	38, 130
BspANI	GGCC	2 cut(s)	10, 264
BspCNI	CTCAG	1 cut(s)	175
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	179, 394
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	211, 534
BssMI	GATC	1 cut(s)	142
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	211
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	1 cut(s)	549
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	534
BstF5I	GGATG	2 cut(s)	449, 462
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 228
BstNI	CCWGG	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	126, 215
BsuRI	GGCC	2 cut(s)	10, 264
BtgI	CCRYGG	1 cut(s)	534
BtsCI	GGATG	2 cut(s)	449, 462
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	490, 500
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	3 cut(s)	43, 110, 140
CviQI	GTAC	2 cut(s)	490, 500
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	211
Eco147I	AGGCCT	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	3 cut(s)	46, 113, 143
FaiI	YATR	6 cut(s)	44, 75, 111, 141, 248, 380
FatI	CATG	3 cut(s)	42, 109, 139
FauI	CCCGC	1 cut(s)	137
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	115, 229
FokI	GGATG	2 cut(s)	436, 469
Fsp4HI	GCNGC	2 cut(s)	115, 229
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	2 cut(s)	115, 229
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	10, 264
HapII	CCGG	4 cut(s)	69, 100, 118, 198
Hin1II	CATG	3 cut(s)	46, 113, 143
HincII	GTYRAC	2 cut(s)	172, 319
HindII	GTYRAC	2 cut(s)	172, 319
HinfI	GANTC	3 cut(s)	396, 437, 446
HpaII	CCGG	4 cut(s)	69, 100, 118, 198
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	3 cut(s)	64, 172, 319
Hpy188I	TCNGA	3 cut(s)	147, 165, 304
Hpy188III	TCNNGA	1 cut(s)	69
Hpy8I	GTNNAC	3 cut(s)	64, 172, 319
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	1 cut(s)	549
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	2 cut(s)	109, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 228
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	3 cut(s)	46, 113, 143
Kpn2I	TCCGGA	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	3 cut(s)	188, 310, 472
Lsp1109I	GCAGC	2 cut(s)	126, 215
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	3 cut(s)	92, 193, 443
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	149, 193
MluCI	AATT	2 cut(s)	273, 480
MlyI	GAGTC	2 cut(s)	440, 446
MnlI	CCTC	6 cut(s)	114, 171, 171, 253, 275, 480
MroI	TCCGGA	1 cut(s)	68
MseI	TTAA	2 cut(s)	204, 276
MspI	CCGG	4 cut(s)	69, 100, 118, 198
MspR9I	CCNGG	1 cut(s)	454
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	2 cut(s)	16, 228
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	3 cut(s)	46, 113, 143
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	3 cut(s)	92, 193, 443
PceI	AGGCCT	1 cut(s)	10
PctI	GAATGC	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	396
PfoI	TCCNGGA	1 cut(s)	452
PinAI	ACCGGT	1 cut(s)	99
PkrI	GCNGC	2 cut(s)	116, 230
PleI	GAGTC	2 cut(s)	440, 445
PpsI	GAGTC	2 cut(s)	440, 445
Psp6I	CCWGG	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	262
PsrI	GAACNNNNNNTAC	2 cut(s)	404, 436
RsaI	GTAC	2 cut(s)	491, 501
RsaNI	GTAC	2 cut(s)	490, 500
SaqAI	TTAA	2 cut(s)	204, 276
SatI	GCNGC	2 cut(s)	115, 229
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	2 cut(s)	440, 446
ScrFI	CCNGG	1 cut(s)	454
SetI	ASST	7 cut(s)	21, 27, 230, 291, 315, 501, 524
SfcI	CTRYAG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	2 cut(s)	273, 480
SseBI	AGGCCT	1 cut(s)	10
SsiI	CCGC	2 cut(s)	38, 130
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	452
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	549
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	242
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	2 cut(s)	273, 480
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	2 cut(s)	204, 276
Tru9I	TTAA	2 cut(s)	204, 276
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	3 cut(s)	92, 193, 443
TseI	GCWGC	2 cut(s)	114, 228
Tsp45I	GTSAC	3 cut(s)	92, 193, 443
TspDTI	ATGAA	3 cut(s)	367, 476, 542
TspRI	CASTG	1 cut(s)	261
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.