Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000421.1

Orthogroup ID

OG0003551

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1001

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000421.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 644 bp

gtagttgctgggcgttttcaacggttgtagctgttgagggcatcaaccagattaagacaaagaaccttgtttcattgtcagagcaagagttggttgactgtgacactcaacagaatcaaggatgcagtggggggctgatggagttggcgttcgagttcatcaaacaaaagggtggcctaacaaccgagacaaactacccttacagagcaactgattcaacatgcaatgctgcaaaggaaaacagtccagtagtgtcaattgatggtcatgagtcggtgcctgctaataatgaagatgcattgctcaaagcagctgcaaaccaacctatcgctgttgccatagacgccggaggttctgattttcaattctactcggagggagtatatgatggaaaatgtggcaccgagctggatcatggagttgcggttgtgggatatggaacaacactcgatggaaccaagtactggacagtcaagaattcttggggcgaccagtggggagaaaagggttacataaggatggctcgtggtattgctgagaaggaggggaaatgtggaatagcaatggaggcctcataccccatcaaaaactcttcaactaatcctacaggagcacctacatcctacccaaaggatgaactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

213

Amino Acids

22.77

Weight (kDa)

4.62

Isoelectric Point (pI)

19.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003551)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48340 AT3G48350 AT3G48350 AT5G50260
fragaria_vesca	FvH4_5g06770 FvH4_5g06770
malus_domestica	MD06G1161000.v1.1 MD13G1105500.v1.1 MD14G1166600.v1.1 MD16G1105700.v1.1
prunus_persica	Prupe.1G240900_v2.0.a1 Prupe.5G160900_v2.0.a1
pyrus_communis	pycom06g14380 pycom14g13920
rosa_chinensis	RchiOBHm_Chr4g0432451 RchiOBHm_Chr7g0191791
rosa_laevigata	RLG00000004423 RLG00000006841
rosa_multiflora	Rmu_sc0041316.1_g000001 Rmu_ssc0000421.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263520 Rroxscaffold_5G00373930
rosa_rugosa	Rorug04G0259100.1 Rorug04G0259200.1 Rorug04G0259300 Rorug04G0259400 Rorug06G0511400
rosa_samantha	Rh4AG314400 Rh4BG322200 Rh4CG337300 Rh7AG121500 Rh7BG122900 Rh7CG125800
rosa_wichuraiana	Rw4G027340 Rw7G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	276, 400
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	1 cut(s)	424
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	4 cut(s)	20, 218, 364, 596
AloI	GAACNNNNNNTCC	2 cut(s)	133, 165
AluBI	AGCT	3 cut(s)	31, 313, 408
AluI	AGCT	3 cut(s)	31, 313, 408
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	419
AoxI	GGCC	2 cut(s)	174, 569
ApeKI	GCWGC	3 cut(s)	229, 310, 313
ApoI	RAATTY	1 cut(s)	477
BanI	GGYRCC	2 cut(s)	276, 400
BauI	CACGAG	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	216, 300, 322
BccI	CCATC	6 cut(s)	132, 256, 382, 445, 513, 589
BcoDI	GTCTC	1 cut(s)	181
BfmI	CTRYAG	1 cut(s)	605
BisI	GCNGC	3 cut(s)	230, 311, 314
BlsI	GCNGC	3 cut(s)	231, 312, 315
BmcAI	AGTACT	1 cut(s)	463
BmiI	GGNNCC	3 cut(s)	278, 402, 456
BmsI	GCATC	3 cut(s)	50, 112, 285
BsaHI	GRCGYC	1 cut(s)	344
BsaXI	ACNNNNNCTCC	4 cut(s)	133, 163, 410, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse1I	ACTGG	3 cut(s)	247, 469, 492
Bse3DI	GCAATG	3 cut(s)	231, 298, 569
BseGI	GGATG	4 cut(s)	127, 524, 619, 639
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	3 cut(s)	231, 298, 569
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	3 cut(s)	247, 469, 492
BseXI	GCAGC	3 cut(s)	216, 300, 322
BseYI	CCCAGC	1 cut(s)	8
BshFI	GGCC	2 cut(s)	176, 571
BshNI	GGYRCC	2 cut(s)	276, 400
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	176, 571
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	1 cut(s)	424
BspANI	GGCC	2 cut(s)	176, 571
BspCNI	CTCAG	1 cut(s)	528
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	3 cut(s)	278, 402, 456
BspPI	GGATC	1 cut(s)	419
BspT107I	GGYRCC	2 cut(s)	276, 400
BsrDI	GCAATG	3 cut(s)	231, 298, 569
BsrI	ACTGG	3 cut(s)	247, 469, 492
BssMI	GATC	1 cut(s)	411
BssNI	GRCGYC	1 cut(s)	344
BssSI	CACGAG	1 cut(s)	524
Bst2BI	CACGAG	1 cut(s)	524
Bst4CI	ACNGT	4 cut(s)	24, 100, 244, 471
Bst6I	CTCTTC	1 cut(s)	597
BstACI	GRCGYC	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	536
BstF5I	GGATG	4 cut(s)	127, 524, 619, 639
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	2 cut(s)	343, 568
BstNSI	RCATGY	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	605
BstV1I	GCAGC	3 cut(s)	216, 300, 322
BsuRI	GGCC	2 cut(s)	176, 571
BtsCI	GGATG	4 cut(s)	127, 524, 619, 639
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	132, 499
Cac8I	GCNNGC	1 cut(s)	281
CciI	TCATGA	1 cut(s)	267
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	3 cut(s)	221, 268, 415
CviJI	RGCY	7 cut(s)	31, 135, 176, 313, 408, 523, 571
CviKI_1	RGCY	7 cut(s)	31, 135, 176, 313, 408, 523, 571
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	1 cut(s)	536
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Eco147I	AGGCCT	1 cut(s)	571
EcoRI	GAATTC	1 cut(s)	477
EcoT22I	ATGCAT	1 cut(s)	300
FaeI	CATG	3 cut(s)	224, 271, 418
FaiI	YATR	9 cut(s)	222, 269, 340, 384, 386, 416, 437, 514, 576
FatI	CATG	3 cut(s)	220, 267, 414
Fnu4HI	GCNGC	3 cut(s)	230, 311, 314
FokI	GGATG	3 cut(s)	134, 531, 606
Fsp4HI	GCNGC	3 cut(s)	230, 311, 314
GluI	GCNGC	3 cut(s)	230, 311, 314
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	176, 571
HapII	CCGG	1 cut(s)	347
HgaI	GACGC	1 cut(s)	352
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	3 cut(s)	224, 271, 418
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	3 cut(s)	114, 214, 271
HpaII	CCGG	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	3 cut(s)	81, 357, 375
Hpy188III	TCNNGA	2 cut(s)	268, 474
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	534
HpyCH4III	ACNGT	4 cut(s)	24, 100, 244, 471
HpyCH4V	TGCA	5 cut(s)	125, 224, 232, 298, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	343, 568
HpyF3I	CTNAG	1 cut(s)	536
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	3 cut(s)	224, 271, 418
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	610
LpnPI	CCDG	8 cut(s)	61, 260, 293, 360, 394, 450, 505, 593
Lsp1109I	GCAGC	3 cut(s)	216, 300, 322
LweI	GCATC	3 cut(s)	50, 112, 285
MaeIII	GTNAC	2 cut(s)	100, 508
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	2 cut(s)	304, 584
MfeI	CAATTG	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	615
MluCI	AATT	3 cut(s)	257, 364, 477
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	6 cut(s)	30, 343, 369, 537, 561, 582
Mph1103I	ATGCAT	1 cut(s)	300
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	517
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	1 cut(s)	347
MunI	CAATTG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	343, 568
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	3 cut(s)	224, 271, 418
NlaIV	GGNNCC	3 cut(s)	278, 402, 456
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	300
NspI	RCATGY	1 cut(s)	224
PagI	TCATGA	1 cut(s)	267
PceI	AGGCCT	1 cut(s)	571
PfeI	GAWTC	2 cut(s)	114, 214
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	3 cut(s)	231, 312, 315
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
PspFI	CCCAGC	1 cut(s)	8
PspN4I	GGNNCC	3 cut(s)	278, 402, 456
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	517
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	3 cut(s)	230, 311, 314
Sau3AI	GATC	1 cut(s)	411
ScaI	AGTACT	1 cut(s)	463
SchI	GAGTC	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	615
SetI	ASST	7 cut(s)	33, 68, 315, 327, 354, 410, 618
SfaNI	GCATC	3 cut(s)	50, 112, 285
SfcI	CTRYAG	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	517
Sse9I	AATT	3 cut(s)	257, 364, 477
SseBI	AGGCCT	1 cut(s)	571
SsiI	CCGC	1 cut(s)	424
StuI	AGGCCT	1 cut(s)	571
TaaI	ACNGT	4 cut(s)	24, 100, 244, 471
TaqI	TCGA	2 cut(s)	152, 449
TasI	AATT	3 cut(s)	257, 364, 477
TatI	WGTACW	1 cut(s)	461
TfiI	GAWTC	2 cut(s)	114, 214
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	2 cut(s)	132, 499
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	3 cut(s)	229, 310, 313
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	62, 147, 305
TspRI	CASTG	2 cut(s)	132, 499
Van91I	CCANNNNNTGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	477
XceI	RCATGY	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	463
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.