Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Reverse (-)

18140771 .. 18142281

Gene Structure 1511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCGGAACAGACTGAGAAAGCTTTTCTTAAGCAGCCTAAGGTCTTCCTTAGCTCGAAGAAATCTGGAAAGGGAAAGAGACCTGGAAAAGGTGGAAACCGTTTCTGGAAGAACATTGGTTTGGGCTTCAAGACTCCTCGTGAAGCCATTGATGGAGCTTACGTTGACAAGAAATGCCCCTTCACTGGAACTGTTTCCATTAGAGGTCGTATCTTAGCTGGTACTTGCCACAGTGCGAAAATGCAGAGGACCATTATCGTGCGAAGGGATTACCTTCACTTTGTGAAGAAGTATCAGAGGTATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCACCATGCTTCCGTGTTAAGGAAGGAGACCATATCATCATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTGATACCAGCTGGGTCTTCTTCTTCATTTGGAAAGAAGGCATTCACTGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

160

Amino Acids

17.96

Weight (kDa)

10.56

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17_N	PF16205	4 - 72	8.7e-31	Ribosomal_S17 N-terminal
Ribosomal_S17	PF00366	74 - 142	5.2e-27	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	379
AdeI	CACNNNGTG	1 cut(s)	283
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	3 cut(s)	89, 185, 355
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	130, 318, 415, 424
AjnI	CCWGG	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	5 cut(s)	23, 54, 158, 218, 437
AluI	AGCT	5 cut(s)	23, 54, 158, 218, 437
Alw26I	GTCTC	3 cut(s)	73, 340, 357
AoxI	GGCC	2 cut(s)	379, 389
ApeKI	GCWGC	1 cut(s)	34
Asp700I	GAANNNNTTC	2 cut(s)	193, 467
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	330, 439
AvaII	GGWCC	1 cut(s)	249
AxyI	CCTNAGG	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	381
BauI	CACGAG	1 cut(s)	138
BbsI	GAAGAC	3 cut(s)	37, 407, 435
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	3 cut(s)	73, 340, 357
BfrI	CTTAAG	1 cut(s)	29
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	84
BpiI	GAAGAC	3 cut(s)	37, 407, 435
Bpu10I	CCTNAGC	1 cut(s)	50
BsaI	GGTCTC	2 cut(s)	73, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 185, 355
Bse1I	ACTGG	2 cut(s)	190, 478
Bse21I	CCTNAGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	89, 185, 355
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	2 cut(s)	190, 478
BseRI	GAGGAG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	437
BshFI	GGCC	2 cut(s)	381, 391
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	89, 185, 355
BsmAI	GTCTC	3 cut(s)	73, 340, 357
BsmI	GAATGC	2 cut(s)	313, 467
BsnI	GGCC	2 cut(s)	381, 391
Bso31I	GGTCTC	2 cut(s)	73, 357
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	381, 391
BspCNI	CTCAG	1 cut(s)	7
BspTI	CTTAAG	1 cut(s)	29
BspTNI	GGTCTC	2 cut(s)	73, 357
BsrI	ACTGG	2 cut(s)	190, 478
BssSI	CACGAG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	4 cut(s)	101, 193, 233, 406
Bst6I	CTCTTC	1 cut(s)	302
BstAFI	CTTAAG	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	4 cut(s)	15, 39, 50, 214
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstMAI	GTCTC	3 cut(s)	73, 340, 357
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	3 cut(s)	37, 407, 435
Bsu36I	CCTNAGG	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	381, 391
BtsIMutI	CAGTG	4 cut(s)	183, 238, 411, 471
Cac8I	GCNNGC	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	2 cut(s)	332, 342
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	4 cut(s)	15, 39, 50, 214
DraIII	CACNNNGTG	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
EciI	GGCGGA	1 cut(s)	20
Eco31I	GGTCTC	2 cut(s)	73, 357
Eco47I	GGWCC	1 cut(s)	249
Eco81I	CCTNAGG	1 cut(s)	39
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	82
FaeI	CATG	2 cut(s)	335, 345
FaiI	YATR	4 cut(s)	303, 333, 343, 369
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	2 cut(s)	331, 341
Fnu4HI	GCNGC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	381, 391
HapII	CCGG	1 cut(s)	326
Hin1II	CATG	2 cut(s)	335, 345
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	2 cut(s)	330, 439
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	4 cut(s)	66, 106, 130, 140
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	6 cut(s)	190, 258, 284, 353, 418, 457
HpyCH4III	ACNGT	4 cut(s)	101, 193, 233, 406
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	244, 387
HpyF3I	CTNAG	4 cut(s)	15, 39, 50, 214
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	335, 345
LmnI	GCTCC	1 cut(s)	155
Lsp1109I	GCAGC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	162
MboII	GAAGA	9 cut(s)	37, 70, 121, 298, 319, 412, 435, 438, 441
MlsI	TGGCCA	1 cut(s)	381
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	6 cut(s)	147, 197, 240, 291, 303, 402
Mox20I	TGGCCA	1 cut(s)	381
MroXI	GAANNNNTTC	2 cut(s)	193, 467
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	2 cut(s)	30, 354
MslI	CAYNNNNRTG	2 cut(s)	257, 476
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	437
MspCI	CTTAAG	1 cut(s)	29
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	2 cut(s)	313, 467
MvaI	CCWGG	1 cut(s)	84
NlaIII	CATG	2 cut(s)	335, 345
PctI	GAATGC	2 cut(s)	313, 467
PdmI	GAANNNNTTC	2 cut(s)	193, 467
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	2 cut(s)	257, 476
SaqAI	TTAA	2 cut(s)	30, 354
SatI	GCNGC	1 cut(s)	35
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	249
SmiMI	CAYNNNNRTG	2 cut(s)	257, 476
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	4 cut(s)	101, 193, 233, 406
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	56, 398
Tru1I	TTAA	2 cut(s)	30, 354
Tru9I	TTAA	2 cut(s)	30, 354
TscAI	CASTG	4 cut(s)	190, 238, 411, 478
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	441
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	4 cut(s)	190, 238, 411, 478
Vha464I	CTTAAG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	249
XagI	CCTNNNNNAGG	1 cut(s)	87
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XmnI	GAANNNNTTC	2 cut(s)	193, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.