Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Reverse (-)

8007921 .. 8009436

Gene Structure 1516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTGAGCAGACTGAGAAAGCTTTTCTTAAGCAACCCAAGGTCTTCCTTAGCTCGAAGATATCTGGGAAAGGAAAGAGACCTGGTAAAGGTGGAAACCGTTTCTGGAAGAACATTGGTTTGGGTTTCAAGACTCCTCGTGAAGCCATTGATGGAGCTTACATTGACAGTAAATGTCCATTCACTGGAACCGTTTCTATCAGAGGACGTATCTTAGCTGGTACTTGCCACAGTGCCAAGATGCAGAGAACCATCATTGTTCGTAGGAATTACCTTCACTTTGTGAAGAAGTATCAACGATATGAGAAGAGACATTCCAACATCCCTGCCCATGTCTCACCGTGTTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAATGCAGGCCGTTGTCGAAGACGGTTAGGTTCAATGTGCTGAAGGTGATTCCAGCGGGTGCATCTGCCTTTGGTAAAAAGGCCTTCACTGGAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

159

Amino Acids

17.75

Weight (kDa)

10.62

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17_N	PF16205	4 - 72	1.7e-29	Ribosomal_S17 N-terminal
Ribosomal_S17	PF00366	74 - 142	2.6e-27	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	185
AciI	CCGC	1 cut(s)	437
AcoI	YGGCCR	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	443
AdeI	CACNNNGTG	1 cut(s)	283
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	3 cut(s)	89, 185, 355
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	130, 415
AjnI	CCWGG	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	4 cut(s)	23, 54, 158, 218
AluI	AGCT	4 cut(s)	23, 54, 158, 218
Alw26I	GTCTC	3 cut(s)	73, 304, 340
AoxI	GGCC	3 cut(s)	379, 389, 462
Asp700I	GAANNNNTTC	1 cut(s)	193
AsuHPI	GGTGA	3 cut(s)	330, 374, 439
BalI	TGGCCA	1 cut(s)	381
BauI	CACGAG	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	37, 407
BccI	CCATC	2 cut(s)	146, 260
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	3 cut(s)	73, 304, 340
BfrI	CTTAAG	1 cut(s)	29
BlpI	GCTNAGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	231, 452
BpiI	GAAGAC	2 cut(s)	37, 407
Bpu10I	CCTNAGC	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 185, 355
Bse1I	ACTGG	2 cut(s)	190, 475
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	3 cut(s)	89, 185, 355
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	2 cut(s)	190, 475
BseRI	GAGGAG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	381, 391, 464
BslI	CCNNNNNNNGG	3 cut(s)	89, 185, 355
BsmAI	GTCTC	3 cut(s)	73, 304, 340
BsnI	GGCC	3 cut(s)	381, 391, 464
Bso31I	GGTCTC	1 cut(s)	73
Bsp1720I	GCTNAGC	1 cut(s)	6
BspACI	CCGC	1 cut(s)	437
BspANI	GGCC	3 cut(s)	381, 391, 464
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	190
BspTI	CTTAAG	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	190, 475
BssECI	CCNNGG	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	6 cut(s)	101, 170, 193, 233, 342, 406
Bst6I	CTCTTC	1 cut(s)	302
BstAFI	CTTAAG	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	4 cut(s)	6, 15, 50, 214
BstEII	GGTNACC	1 cut(s)	362
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	321
BstMAI	GTCTC	3 cut(s)	73, 304, 340
BstNI	CCWGG	1 cut(s)	84
BstPI	GGTNACC	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	82
BstV2I	GAAGAC	2 cut(s)	37, 407
BsuRI	GGCC	3 cut(s)	381, 391, 464
BtsCI	GGATG	1 cut(s)	321
BtsIMutI	CAGTG	3 cut(s)	183, 238, 468
Cac8I	GCNNGC	1 cut(s)	389
CsiI	ACCWGGT	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	2 cut(s)	332, 368
CviJI	RGCY	9 cut(s)	5, 23, 54, 146, 158, 218, 381, 391, 464
CviKI_1	RGCY	9 cut(s)	5, 23, 54, 146, 158, 218, 381, 391, 464
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	4 cut(s)	6, 15, 50, 214
DraIII	CACNNNGTG	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	464
Eco31I	GGTCTC	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	443
Eco91I	GGTNACC	1 cut(s)	362
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoO65I	GGTNACC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	82
EcoRV	GATATC	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	335, 371
FaiI	YATR	3 cut(s)	303, 333, 369
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	2 cut(s)	331, 367
FauI	CCCGC	1 cut(s)	430
FokI	GGATG	1 cut(s)	308
HaeIII	GGCC	3 cut(s)	381, 391, 464
Hin1II	CATG	2 cut(s)	335, 371
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	2 cut(s)	133, 430
HphI	GGTGA	3 cut(s)	330, 374, 439
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	3 cut(s)	106, 130, 140
HpyAV	CCTTC	4 cut(s)	284, 353, 418, 475
HpyCH4III	ACNGT	6 cut(s)	101, 170, 193, 233, 342, 406
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	3 cut(s)	244, 387, 443
HpyF3I	CTNAG	4 cut(s)	6, 15, 50, 214
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	335, 371
LmnI	GCTCC	1 cut(s)	155
LweI	GCATC	2 cut(s)	231, 452
MabI	ACCWGGT	1 cut(s)	82
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	362
MboII	GAAGA	6 cut(s)	37, 70, 121, 298, 319, 412
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	1 cut(s)	268
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	2 cut(s)	147, 197
Mox20I	TGGCCA	1 cut(s)	381
MroXI	GAANNNNTTC	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	437
MspCI	CTTAAG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
NlaIII	CATG	2 cut(s)	335, 371
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	430
PflFI	GACNNNGTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	185
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	82
PspEI	GGTNACC	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	190
PsyI	GACNNNGTC	1 cut(s)	368
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	30
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	84
SexAI	ACCWGGT	1 cut(s)	82
SfaNI	GCATC	2 cut(s)	231, 452
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	268
SseBI	AGGCCT	1 cut(s)	464
SsiI	CCGC	1 cut(s)	437
StuI	AGGCCT	1 cut(s)	464
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	6 cut(s)	101, 170, 193, 233, 342, 406
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	2 cut(s)	56, 398
TasI	AATT	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	3 cut(s)	190, 238, 475
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	190, 238, 475
Tth111I	GACNNNGTC	1 cut(s)	368
Van91I	CCANNNNNTGG	1 cut(s)	185
Vha464I	CTTAAG	1 cut(s)	29
XagI	CCTNNNNNAGG	1 cut(s)	87
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.