Rh2BG022200

Belongs to the universal ribosomal protein uS17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001732
Physical Location & Seq
Reverse (-)
1501908 .. 1504413
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG022200.1

Sequence Viewer

Length: 354 bp
ATGAATTCAATATTTGTGGTTCTAACAGGGACTTACATTGATAAGAAATGCCCATTCACTGGAAATGTGTCTATCAGGGGTCGTATCTTAGCTGGTACTTGCCACAGTGCTAAGATGAATAAAACCATTATTGTTCGACGGAATTACCTGCATTATATCAAAAAATACCAAAGATATGAGAAGAGGCACTCTAACATTGCTGCACACGTGTCTCCATGCTTCCGTGTGAAAGAAGGGGACCATGTTATCATCGGGCAGTGCAGGCCATTGTCCAAGACTAAGAGGTTCAATGTGCTGAAGGTGATTCCTGCTGGATCGTCTGCTGGTGGCAAAAAGGCTTTCACTGGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

117

Amino Acids

13.11

Weight (kDa)

10.41

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17_N PF16205 9 - 30 1.6e-11 Ribosomal_S17 N-terminal
Ribosomal_S17 PF00366 32 - 100 2.6e-29 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 156
AccB7I CCANNNNNTGG 1 cut(s) 59
AclWI GGATC 1 cut(s) 322
AcsI RAATTY 2 cut(s) 4, 348
AcuI CTGAAG 1 cut(s) 317
AcvI CACGTG 1 cut(s) 208
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 59
AflIII ACRYGT 2 cut(s) 205, 207
AgsI TTSAA 2 cut(s) 9, 289
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 1 cut(s) 322
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 2 cut(s) 4, 348
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 313
AvaII GGWCC 1 cut(s) 238
BbrPI CACGTG 1 cut(s) 208
BbvI GCAGC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 64, 349
Bse3DI GCAATG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 195
BseNI ACTGG 2 cut(s) 64, 349
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 2 cut(s) 186, 280
BshFI GGCC 1 cut(s) 265
BslFI GGGAC 2 cut(s) 43, 251
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 216
BsmFI GGGAC 2 cut(s) 43, 251
BsnI GGCC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 314
BspANI GGCC 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 239
BspMI ACCTGC 1 cut(s) 156
BspPI GGATC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 2 cut(s) 64, 349
BssMI GATC 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 176
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 3 cut(s) 88, 111, 279
BstKTI GATC 1 cut(s) 317
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 1 cut(s) 314
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 4 cut(s) 57, 112, 263, 342
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 96
CspCI CAANNNNNGTGG 1 cut(s) 32
CviAII CATG 2 cut(s) 216, 242
CviJI RGCY 3 cut(s) 92, 265, 338
CviKI_1 RGCY 3 cut(s) 92, 265, 338
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 3 cut(s) 88, 111, 279
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 317
Eco72I CACGTG 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 4
FaeI CATG 2 cut(s) 219, 245
FaiI YATR 4 cut(s) 156, 177, 217, 243
FaqI GGGAC 2 cut(s) 43, 251
FatI CATG 2 cut(s) 215, 241
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 265
Hin1II CATG 2 cut(s) 219, 245
HinfI GANTC 1 cut(s) 304
HphI GGTGA 1 cut(s) 313
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 227, 292
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 151, 203, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 3 cut(s) 88, 111, 279
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 2 cut(s) 219, 245
Kzo9I GATC 1 cut(s) 314
Lsp1109I GCAGC 1 cut(s) 187
MaeII ACGT 1 cut(s) 207
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MboII GAAGA 1 cut(s) 193
MluCI AATT 3 cut(s) 4, 142, 348
MnlI CCTC 2 cut(s) 177, 276
MseI TTAA 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 262
NdeII GATC 1 cut(s) 314
NlaIII CATG 2 cut(s) 219, 245
NlaIV GGNNCC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 304
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 1 cut(s) 202
PmaCI CACGTG 1 cut(s) 208
PmlI CACGTG 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 208
PspCI CACGTG 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 1 cut(s) 238
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 314
Sau96I GGNCC 1 cut(s) 238
SetI ASST 5 cut(s) 94, 150, 210, 287, 303
SinI GGWCC 1 cut(s) 238
Sse9I AATT 3 cut(s) 4, 142, 348
SspI AATATT 1 cut(s) 12
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 136
TasI AATT 3 cut(s) 4, 142, 348
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TscAI CASTG 4 cut(s) 64, 112, 263, 349
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 17, 131
TspGWI ACGGA 2 cut(s) 154, 212
TspRI CASTG 4 cut(s) 64, 112, 263, 349
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 2 cut(s) 4, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.