pycom02g01400

Belongs to the universal ribosomal protein uS17 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
837347 .. 837773
427 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g01400.2

Sequence Viewer

Length: 312 bp
ATGCTTATGTTTTTTGGGATTAATTTCCAAAGTTCGGTTCATAGTTCTACTCCAAATCGAGCATGGTTGTACTCTTCATTTCTTGTCTCAGTATTGGGTACGTGCATTGTTGTATTTGCTGATACGGTAGCTACCTGTGCTTATTGTATCTTACAGACTTACATTGATAAGAAATGCTCTTTCACTGGAAATGTTTCTATCAGGGGCCGCATCTTGGCTGTCACTTGCCATAGTGCTAAGATGAATAAAACAATCATCGTTCGAAGGAATTATCTACATTATATCAAGAAATATCAGAGGTCGCTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.71

Weight (kDa)

9.8

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 208
AfaI GTAC 2 cut(s) 71, 100
AfiI CCNNNNNNNGG 2 cut(s) 34, 214
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 91
AoxI GGCC 1 cut(s) 205
AseI ATTAAT 1 cut(s) 21
Asp700I GAANNNNTTC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 205
AsuII TTCGAA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 91
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 206
BmsI GCATC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 262
BsaAI YACGTR 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 214
Bse1I ACTGG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 34, 214
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 190
BshFI GGCC 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 34, 214
BsmAI GTCTC 1 cut(s) 91
BsnI GGCC 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 262
BspACI CCGC 1 cut(s) 208
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 262
BsrI ACTGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 102
BstBI TTCGAA 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 88, 237
BstMAI GTCTC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 2 cut(s) 70, 99
CviAII CATG 1 cut(s) 63
CviJI RGCY 3 cut(s) 131, 207, 218
CviKI_1 RGCY 3 cut(s) 131, 207, 218
CviQI GTAC 2 cut(s) 70, 99
DdeI CTNAG 2 cut(s) 88, 237
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
FaeI CATG 1 cut(s) 66
FaiI YATR 5 cut(s) 8, 42, 64, 231, 282
FatI CATG 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 208
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 88, 237
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 1 cut(s) 66
LpnPI CCDG 3 cut(s) 148, 171, 187
LweI GCATC 1 cut(s) 219
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 1 cut(s) 66
MluCI AATT 2 cut(s) 22, 268
MnlI CCTC 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 193
MseI TTAA 2 cut(s) 21, 310
MwoI GCNNNNNNNGC 1 cut(s) 137
NlaIII CATG 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 220
NspV TTCGAA 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 209
Ppu21I YACGTR 1 cut(s) 102
PshBI ATTAAT 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 205
RsaI GTAC 2 cut(s) 71, 100
RsaNI GTAC 2 cut(s) 70, 99
SaqAI TTAA 2 cut(s) 21, 310
SatI GCNGC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 205
SetI ASST 4 cut(s) 104, 133, 137, 302
SfaNI GCATC 1 cut(s) 219
SfuI TTCGAA 1 cut(s) 262
Sse9I AATT 2 cut(s) 22, 268
SsiI CCGC 1 cut(s) 208
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 104
TaqI TCGA 2 cut(s) 58, 262
TasI AATT 2 cut(s) 22, 268
TatI WGTACW 1 cut(s) 69
TauI GCSGC 1 cut(s) 210
Tru1I TTAA 2 cut(s) 21, 310
Tru9I TTAA 2 cut(s) 21, 310
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 29, 66, 257
TspRI CASTG 1 cut(s) 190
VspI ATTAAT 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.