Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Reverse (-)

1180358 .. 1189201

Gene Structure 8844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1015900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGCCCTTTCACTGGAAATGTTTCTATAGGGGCCGCATCTTGGCTGGCACTTGCCATAGTGCTAAGATGAATAAAACAATCATCGTTCGAAGGAATTATCTACATTATATCAAGAAATATCAGAGATATGAAAAGAGACATTCCAACATCCGGCTCACGTATCTCCATGCTTCCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

60

Amino Acids

7.3

Weight (kDa)

10.45

Isoelectric Point (pI)

68.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17	PF00366	16 - 50	6.9e-11	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	34
AfiI	CCNNNNNNNGG	3 cut(s)	12, 40, 150
Alw26I	GTCTC	1 cut(s)	130
AoxI	GGCC	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	31
AsuII	TTCGAA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	130
BfmI	CTRYAG	1 cut(s)	25
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	32
BmsI	GCATC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 40, 150
Bse1I	ACTGG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	3 cut(s)	12, 40, 150
BseNI	ACTGG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	3 cut(s)	12, 40, 150
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	88
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	17
BstBAI	YACGTR	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	147
BstMAI	GTCTC	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	31
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	3 cut(s)	33, 44, 154
CviKI_1	RGCY	3 cut(s)	33, 44, 154
DdeI	CTNAG	1 cut(s)	63
FaeI	CATG	1 cut(s)	170
FaiI	YATR	5 cut(s)	27, 57, 108, 129, 168
FatI	CATG	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	1 cut(s)	170
HpaII	CCGG	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	170
LpnPI	CCDG	2 cut(s)	30, 164
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	1 cut(s)	158
MluCI	AATT	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	168
MroXI	GAANNNNTTC	1 cut(s)	20
MspI	CCGG	1 cut(s)	151
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	1 cut(s)	32
NspV	TTCGAA	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	31
SatI	GCNGC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	31
SetI	ASST	1 cut(s)	161
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	25
SfuI	TTCGAA	1 cut(s)	88
SgeI	CNNG	7 cut(s)	25, 52, 57, 63, 124, 163, 169
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	1 cut(s)	34
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	88
TasI	AATT	1 cut(s)	94
TauI	GCSGC	1 cut(s)	36
TscAI	CASTG	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	83, 144
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.