Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Forward (+)

11005206 .. 11007103

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGGAACAGACGGAGAGGGCTTTCCTGAAACAGCCCAAGGTTTTCCTCAGCTCCAAGAAGACTGGCAAGGGGAAGAGGCCAGGAAAGGGAGGCAATCGCTTCTGGAAGAGCGTTGGTTTGGGATTCAAGACTCCCAGAGATGCCATTGAAGGAACATACATTGATAAGAAGTGCCCTTTCACTGGTAATGTCTCCATCAGGGGTCGCATTCTGGCTGGTACCTGCCACAGTGCAAAGATGTCGAGGACTATCATTGTTCGGCGCAATTACCTCCACTACATAAAGAAATACCAGAGATATGAGAAGAGGCATTCAAACATCCCAGCCCATGTTTCACCATGCTTCCGTGTGAAGGAGGGAGATCATGTCATCATTGGGCAGTGCAGGCCATTGTCAAAGACGGTTAGGTTTAATGTTTTGAAGGTCATTCCAGCTGGGGCTTCAGCTGGTGGGAAGAAGGCATTTACTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

160

Amino Acids

17.72

Weight (kDa)

10.66

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17_N	PF16205	4 - 72	5.3e-32	Ribosomal_S17 N-terminal
Ribosomal_S17	PF00366	74 - 142	1.6e-27	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	233
Acc65I	GGTACC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	3 cut(s)	89, 185, 355
AgsI	TTSAA	4 cut(s)	130, 152, 318, 424
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	4 cut(s)	54, 437, 449, 476
AluI	AGCT	4 cut(s)	54, 437, 449, 476
Alw26I	GTCTC	1 cut(s)	199
AoxI	GGCC	2 cut(s)	80, 389
Asp718I	GGTACC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	50
BccI	CCATC	1 cut(s)	206
BcgI	CGANNNNNNTGC	2 cut(s)	225, 259
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 185, 355
Bse1I	ACTGG	3 cut(s)	70, 190, 475
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	3 cut(s)	89, 185, 355
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	3 cut(s)	70, 190, 475
BseSI	GKGCMC	1 cut(s)	179
BseYI	CCCAGC	2 cut(s)	325, 437
BsgI	GTGCAG	1 cut(s)	406
BshFI	GGCC	2 cut(s)	82, 391
BshNI	GGYRCC	1 cut(s)	221
BslI	CCNNNNNNNGG	3 cut(s)	89, 185, 355
BsmAI	GTCTC	1 cut(s)	199
BsmI	GAATGC	2 cut(s)	210, 313
BsnI	GGCC	2 cut(s)	82, 391
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	82, 391
BspCNI	CTCAG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	221
BsrI	ACTGG	3 cut(s)	70, 190, 475
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	364
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	233, 406
Bst6I	CTCTTC	3 cut(s)	71, 104, 302
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	50, 477
BstF5I	GGATG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	82, 391
BtsCI	GGATG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	3 cut(s)	183, 238, 389
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	389
CfoI	GCGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	3 cut(s)	332, 342, 368
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	2 cut(s)	50, 477
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	3 cut(s)	71, 104, 302
EarI	CTCTTC	3 cut(s)	71, 104, 302
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	335, 345, 371
FaiI	YATR	6 cut(s)	160, 284, 303, 333, 343, 369
FatI	CATG	3 cut(s)	331, 341, 367
FokI	GGATG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	266
GsaI	CCCAGC	2 cut(s)	329, 441
HaeIII	GGCC	2 cut(s)	82, 391
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	335, 345, 371
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	126, 133
HphI	GGTGA	1 cut(s)	330
Hpy188III	TCNNGA	3 cut(s)	28, 106, 130
HpyAV	CCTTC	4 cut(s)	146, 349, 418, 454
HpyCH4III	ACNGT	2 cut(s)	233, 406
HpyCH4V	TGCA	2 cut(s)	236, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	2 cut(s)	50, 477
Hsp92II	CATG	3 cut(s)	335, 345, 371
HspAI	GCGC	1 cut(s)	265
KpnI	GGTACC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	364
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	59, 473
LweI	GCATC	1 cut(s)	133
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	5 cut(s)	73, 88, 121, 319, 469
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	8 cut(s)	12, 59, 72, 86, 240, 284, 303, 352
MseI	TTAA	1 cut(s)	414
MspA1I	CMGCKG	2 cut(s)	437, 449
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	2 cut(s)	210, 313
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	388
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	3 cut(s)	335, 345, 371
NlaIV	GGNNCC	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	104
PctI	GAATGC	2 cut(s)	210, 313
PfeI	GAWTC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	2 cut(s)	325, 437
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	223
PvuII	CAGCTG	2 cut(s)	437, 449
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	414
Sau3AI	GATC	1 cut(s)	364
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	9 cut(s)	45, 56, 227, 276, 413, 429, 439, 451, 478
SfaNI	GCATC	1 cut(s)	133
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	233, 406
TaqI	TCGA	1 cut(s)	245
TasI	AATT	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	3 cut(s)	190, 238, 389
TspGWI	ACGGA	2 cut(s)	29, 338
TspRI	CASTG	3 cut(s)	190, 238, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.