Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Reverse (-)

22444254 .. 22445689

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g27160.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGGAACAGACTGAGAAGGCGTTTCTGAAGCAGCCCAAAGTGTTCATCAGCTCTAAGAAATCTGGGAAGGGGAAGAGACCCGGAAAGGGCGGTAACCGGTTCTGGAAGAGCGTTGGGCTCGGTTTCAAGACCCCCAGGGATGCCATTGAAGGGACTTACATTGATAAGAAATGCCCGTTCACTGGAAATGTTTCAATCAGGGGCCGTATCTTAGCTGGAACTTGCCATAGTGCTAAGATGAATAAAACAATCATTGTTCGAAGAAATTATCTACATTATATCACAAAGTATCAAAGATACGAGAAACGACATTCCAACATACCCGCCCACGTATCTCCATGCTTCCGTGTGAAGGAAGGAGATCACGTTACCATCGGCCAGTGCAGGCCATTGTCCAAGACTAAGAGGTTCAACGTCTTGAAGGTGACACATGCTCGATCTTCCGGCACTGGCAAGAAGGCTTTTGCTGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

160

Amino Acids

17.85

Weight (kDa)

10.6

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 93, 327
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	50
AfiI	CCNNNNNNNGG	4 cut(s)	89, 153, 185, 355
AgeI	ACCGGT	1 cut(s)	99
AgsI	TTSAA	5 cut(s)	130, 152, 198, 415, 424
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	2 cut(s)	54, 218
AluI	AGCT	2 cut(s)	54, 218
Alw26I	GTCTC	1 cut(s)	73
AoxI	GGCC	3 cut(s)	205, 379, 389
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	474
AsiGI	ACCGGT	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	439
AsuII	TTCGAA	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	84, 139
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	2 cut(s)	84, 139
BmsI	GCATC	1 cut(s)	133
Bpu14I	TTCGAA	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	334
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	137, 138
BsaWI	WCCGGW	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 153, 185, 355
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	3 cut(s)	190, 382, 457
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	137, 138
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	4 cut(s)	89, 153, 185, 355
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	3 cut(s)	190, 382, 457
BseXI	GCAGC	1 cut(s)	46
BsgI	GTGCAG	1 cut(s)	406
BshFI	GGCC	3 cut(s)	207, 381, 391
BshTI	ACCGGT	1 cut(s)	99
BsiSI	CCGG	3 cut(s)	84, 100, 447
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	4 cut(s)	89, 153, 185, 355
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	3 cut(s)	207, 381, 391
Bso31I	GGTCTC	1 cut(s)	73
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	364, 440
BspACI	CCGC	3 cut(s)	5, 93, 327
BspANI	GGCC	3 cut(s)	207, 381, 391
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	3 cut(s)	190, 382, 457
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	137, 138
BssMI	GATC	2 cut(s)	364, 440
Bst2UI	CCWGG	1 cut(s)	139
Bst6I	CTCTTC	2 cut(s)	71, 104
BstBAI	YACGTR	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	5 cut(s)	15, 57, 214, 237, 405
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	2 cut(s)	367, 443
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	2 cut(s)	364, 440
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	437
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	82, 137
BstV1I	GCAGC	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	207, 381, 391
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	3 cut(s)	183, 389, 450
Cac8I	GCNNGC	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	205
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	2 cut(s)	342, 434
CviJI	RGCY	8 cut(s)	37, 54, 121, 207, 218, 381, 391, 464
CviKI_1	RGCY	8 cut(s)	37, 54, 121, 207, 218, 381, 391, 464
DdeI	CTNAG	5 cut(s)	15, 57, 214, 237, 405
DpnI	GATC	2 cut(s)	366, 442
DpnII	GATC	2 cut(s)	364, 440
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	71, 104
EarI	CTCTTC	2 cut(s)	71, 104
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	50
Eco91I	GGTNACC	1 cut(s)	95
EcoO65I	GGTNACC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	2 cut(s)	345, 437
FaiI	YATR	5 cut(s)	231, 282, 323, 343, 435
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	341, 433
FauI	CCCGC	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	207, 381, 391
HapII	CCGG	3 cut(s)	84, 100, 447
Hin1II	CATG	2 cut(s)	345, 437
HpaII	CCGG	3 cut(s)	84, 100, 447
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	3 cut(s)	106, 130, 421
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	7 cut(s)	13, 64, 146, 349, 353, 418, 454
HpyCH4IV	ACGT	3 cut(s)	333, 369, 417
HpyCH4V	TGCA	1 cut(s)	387
HpyF3I	CTNAG	5 cut(s)	15, 57, 214, 237, 405
HpySE526I	ACGT	3 cut(s)	333, 369, 417
Hsp92II	CATG	2 cut(s)	345, 437
Kzo9I	GATC	2 cut(s)	364, 440
LguI	GCTCTTC	1 cut(s)	104
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	3 cut(s)	333, 369, 417
MaeIII	GTNAC	3 cut(s)	95, 370, 427
MalI	GATC	2 cut(s)	366, 442
MboI	GATC	2 cut(s)	364, 440
MboII	GAAGA	4 cut(s)	88, 121, 276, 435
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	268, 474
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	1 cut(s)	402
MroXI	GAANNNNTTC	1 cut(s)	193
MspI	CCGG	3 cut(s)	84, 100, 447
MspR9I	CCNGG	2 cut(s)	84, 139
MvaI	CCWGG	1 cut(s)	139
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	364, 440
NlaIII	CATG	2 cut(s)	345, 437
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	437
NspV	TTCGAA	1 cut(s)	262
PasI	CCCWGGG	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	36
Ppu21I	YACGTR	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	104
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	364, 440
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	84, 139
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	7 cut(s)	56, 220, 336, 372, 413, 420, 429
SfaNI	GCATC	1 cut(s)	133
SfuI	TTCGAA	1 cut(s)	262
Sse9I	AATT	2 cut(s)	268, 474
SsiI	CCGC	3 cut(s)	5, 93, 327
StyD4I	CCNGG	2 cut(s)	82, 137
TaiI	ACGT	3 cut(s)	336, 372, 420
TaqI	TCGA	2 cut(s)	262, 439
TasI	AATT	2 cut(s)	268, 474
TscAI	CASTG	3 cut(s)	190, 389, 457
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	37, 257
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	190, 389, 457
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.