Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Reverse (-)

89511666 .. 89514722

Gene Structure 3057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTCAGTTTTACCTCGAAGAAAACACGGAAGGGTAAGAGCCCTGGAAAGGGAGGCAACCGATTCTGGAAGAGTATTGGGCTGGTGAGCTTCAAGACCCCCAGGGATGCCATTGAAGTTTTGTTCTTTGTTGTTGGATGGGTTGAATTTTCATACAATCAAAAGTGTTTGTTGCTTAAATTATCAAGTATGGAGAGAGGACTATGGTTCTGCAGTCTACGAGCGAGCAGCGAGAAGCTTGCGGACTCCTTGCTTCCTCCTCCTTATCCTGGGAATGGTCATGCTAACTTTGCGGAGAAATATAGCCTGATATGGCCGTTTTTAGATAATGATAATGATGGATACGATCTAGATTATCATATTCAAGGTTTCTCTTCCATTGCAGAAGCCATTGAAGATATTCATCAAGGCAAGATGGTAATTGTTGTAGATGATGAAGATAGAGAAAACGAGGGAGTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0008686 GO:0009058 GO:0009110 GO:0009231 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016830 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko00790 ko01100 ko01110 map00740 map00790 map01100 map01110

Pfam Domains

Protein Families

DHBP_synthase GTP_cyclohydro2

Protein Analysis

154

Amino Acids

17.4

Weight (kDa)

5.61

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHBP_synthase	PF00926	129 - 154	4.2e-07	3,4-dihydroxy-2-butanone 4-phosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	217
AciI	CCGC	2 cut(s)	242, 293
AcoI	YGGCCR	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	146
AfiI	CCNNNNNNNGG	4 cut(s)	49, 50, 269, 275
AgsI	TTSAA	5 cut(s)	94, 116, 146, 365, 395
AjnI	CCWGG	3 cut(s)	43, 101, 268
AluBI	AGCT	2 cut(s)	90, 238
AluI	AGCT	2 cut(s)	90, 238
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	228
ApoI	RAATTY	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	399
AsuHPI	GGTGA	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	3 cut(s)	132, 332, 409
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	3 cut(s)	45, 103, 270
BciVI	GTATCC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	211
BfuI	GTATCC	1 cut(s)	335
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	3 cut(s)	45, 103, 270
BmrFI	CCNGG	3 cut(s)	45, 103, 270
BmsI	GCATC	1 cut(s)	97
BsaBI	GATNNNNATC	1 cut(s)	402
BsaJI	CCNNGG	4 cut(s)	43, 101, 102, 269
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 50, 269, 275
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	3 cut(s)	45, 103, 270
BseDI	CCNNGG	4 cut(s)	43, 101, 102, 269
BseGI	GGATG	2 cut(s)	112, 143
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	49, 50, 269, 275
BseMI	GCAATG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	240
BshFI	GGCC	1 cut(s)	316
BslI	CCNNNNNNNGG	4 cut(s)	49, 50, 269, 275
BsnI	GGCC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	2 cut(s)	242, 293
BspANI	GGCC	1 cut(s)	316
BspMAI	CTGCAG	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	378
BssECI	CCNNGG	4 cut(s)	43, 101, 102, 269
BssMI	GATC	1 cut(s)	346
Bst2UI	CCWGG	3 cut(s)	45, 103, 270
Bst6I	CTCTTC	2 cut(s)	65, 379
BstC8I	GCNNGC	2 cut(s)	226, 240
BstF5I	GGATG	2 cut(s)	112, 143
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	3 cut(s)	45, 103, 270
BstSCI	CCNGG	3 cut(s)	43, 101, 268
BstSFI	CTRYAG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	240
BsuI	GTATCC	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	112, 143
Cac8I	GCNNGC	2 cut(s)	226, 240
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	7 cut(s)	42, 82, 90, 238, 306, 316, 389
CviKI_1	RGCY	7 cut(s)	42, 82, 90, 238, 306, 316, 389
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	314
Eam1104I	CTCTTC	2 cut(s)	65, 379
EarI	CTCTTC	2 cut(s)	65, 379
Eco24I	GRGCYC	1 cut(s)	44
EcoRII	CCWGG	3 cut(s)	43, 101, 268
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	1 cut(s)	284
FaiI	YATR	8 cut(s)	154, 191, 205, 282, 303, 313, 360, 463
FatI	CATG	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	2 cut(s)	119, 150
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	316
Hin1II	CATG	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	3 cut(s)	63, 245, 456
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188III	TCNNGA	3 cut(s)	67, 94, 350
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	213, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
Hsp92II	CATG	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	346
LpnPI	CCDG	9 cut(s)	30, 52, 57, 68, 88, 115, 255, 282, 320
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	350
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	5 cut(s)	31, 82, 366, 407, 449
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	3 cut(s)	146, 179, 420
MlyI	GAGTC	2 cut(s)	239, 465
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	6 cut(s)	25, 47, 191, 267, 270, 445
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	1 cut(s)	177
MspR9I	CCNGG	3 cut(s)	45, 103, 270
MvaI	CCWGG	3 cut(s)	45, 103, 270
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	284
PasI	CCCWGGG	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	2 cut(s)	239, 464
PpsI	GAGTC	2 cut(s)	239, 464
PsiI	TTATAA	1 cut(s)	463
Psp6I	CCWGG	3 cut(s)	43, 101, 268
PspGI	CCWGG	3 cut(s)	43, 101, 268
PstI	CTGCAG	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	1 cut(s)	346
SchI	GAGTC	2 cut(s)	239, 465
ScrFI	CCNGG	3 cut(s)	45, 103, 270
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	4 cut(s)	17, 92, 240, 370
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	211
Sse9I	AATT	3 cut(s)	146, 179, 420
SsiI	CCGC	2 cut(s)	242, 293
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	43, 101, 268
TaqI	TCGA	1 cut(s)	17
TasI	AATT	3 cut(s)	146, 179, 420
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	1 cut(s)	228
TspDTI	ATGAA	3 cut(s)	141, 392, 450
TspGWI	ACGGA	1 cut(s)	43
XapI	RAATTY	1 cut(s)	146
XbaI	TCTAGA	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.