Rmu_co8399123.1_g000001

Belongs to the universal ribosomal protein uS17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8399123.1
OG0001732
Physical Location & Seq
Forward (+)
1 .. 753
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8399123.1_g000001.1.cds

Sequence Viewer

Length: 326 bp
ggacttacattgataagaaatgcccattcactggaaatgtgtctatcaggggtcgtatcttagctggtacttgccacagtgctaagatgaataaaaccattattgttcgacggaattacctgcattatatcaaaaaataccaaagatatgagaagaggcactctaacattgctgcacacgtgtctccatgcttccgtgtgaaagaaggggaccatgttatcatcgggcagtgcaggccattgtccaagactaagaggttcaatgtgctgaaggtgattcctgctggatcatctgctggtggcaaaaaggcattcactggaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

107

Amino Acids

12.05

Weight (kDa)

10.41

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 31
AclWI GGATC 1 cut(s) 294
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 289
AcvI CACGTG 1 cut(s) 180
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 31
AflIII ACRYGT 2 cut(s) 177, 179
AgsI TTSAA 1 cut(s) 261
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 1 cut(s) 294
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 285
AvaII GGWCC 1 cut(s) 210
BbrPI CACGTG 1 cut(s) 180
BbvI GCAGC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 128
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 211
BsaAI YACGTR 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 2 cut(s) 36, 321
Bse3DI GCAATG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMI GCAATG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 36, 321
BseXI GCAGC 1 cut(s) 159
BsgI GTGCAG 2 cut(s) 158, 252
BshFI GGCC 1 cut(s) 237
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 223
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 286
BspANI GGCC 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 167
BsrI ACTGG 2 cut(s) 36, 321
BssMI GATC 1 cut(s) 286
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 148
BstBAI YACGTR 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 3 cut(s) 60, 83, 251
BstKTI GATC 1 cut(s) 289
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 4 cut(s) 29, 84, 235, 314
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 68
CviAII CATG 2 cut(s) 188, 214
CviJI RGCY 2 cut(s) 64, 237
CviKI_1 RGCY 2 cut(s) 64, 237
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 3 cut(s) 60, 83, 251
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 289
Eco72I CACGTG 1 cut(s) 180
FaeI CATG 2 cut(s) 191, 217
FaiI YATR 4 cut(s) 128, 149, 189, 215
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 187, 213
Fnu4HI GCNGC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 173
HaeIII GGCC 1 cut(s) 237
Hin1II CATG 2 cut(s) 191, 217
HinfI GANTC 1 cut(s) 276
HphI GGTGA 1 cut(s) 285
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 199, 264
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 3 cut(s) 123, 175, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 3 cut(s) 60, 83, 251
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 2 cut(s) 191, 217
Kzo9I GATC 1 cut(s) 286
LpnPI CCDG 9 cut(s) 17, 33, 50, 133, 219, 269, 281, 293, 302
Lsp1109I GCAGC 1 cut(s) 159
MaeII ACGT 1 cut(s) 179
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 1 cut(s) 165
MluCI AATT 2 cut(s) 114, 320
MnlI CCTC 2 cut(s) 149, 248
MseI TTAA 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeII GATC 1 cut(s) 286
NlaIII CATG 2 cut(s) 191, 217
NlaIV GGNNCC 1 cut(s) 211
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 276
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 1 cut(s) 174
PmaCI CACGTG 1 cut(s) 180
PmlI CACGTG 1 cut(s) 180
Ppu21I YACGTR 1 cut(s) 180
PspCI CACGTG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 210
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 210
SetI ASST 5 cut(s) 66, 122, 182, 259, 275
SinI GGWCC 1 cut(s) 210
Sse9I AATT 2 cut(s) 114, 320
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 108
TasI AATT 2 cut(s) 114, 320
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 4 cut(s) 36, 84, 235, 321
TseI GCWGC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 103
TspGWI ACGGA 2 cut(s) 126, 184
TspRI CASTG 4 cut(s) 36, 84, 235, 321
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.