Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Reverse (-)

940945 .. 941849

Gene Structure 905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1014400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCCCTTTCACTGGAAATGTTTCTATGGGGGCCGCATCCTGGCTGGCACTTGCCATGGTGCTAAGATGAATAAAACAATCATCGTTCGAAGGAATTATCTACATTATGTCAAGAAATATCAAAGATATGAAAAGAGACATTCCAACATCCCGGCACACGTACCTCCATGCTTCGGTGTGAAGGAAGGAGATCATGCTACCATCGGCCGGTGCAGTGCTCATTTTGTTCATTTTTTTTTGGGTGCCTTACCAATGTTCGGGCCACTGTCCGAGACTAAGAGGTTCAACGTGTTGAAGGTGACTCCTGCTGGATCTTCCGGCACTGGCAAGAAGGCTTTCGCTGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

117

Amino Acids

12.99

Weight (kDa)

10.13

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17	PF00366	16 - 71	8.2e-18	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	345
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	5 cut(s)	12, 40, 173, 207, 257
AflIII	ACRYGT	2 cut(s)	157, 288
AgsI	TTSAA	2 cut(s)	286, 295
AjnI	CCWGG	1 cut(s)	39
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	2 cut(s)	130, 266
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	3 cut(s)	31, 205, 260
ApoI	RAATTY	1 cut(s)	345
Asp700I	GAANNNNTTC	2 cut(s)	20, 335
AspS9I	GGNCC	2 cut(s)	31, 260
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	220
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	130, 266
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	2 cut(s)	41, 152
BmgT120I	GGNCC	2 cut(s)	31, 260
BmiI	GGNNCC	2 cut(s)	32, 244
BmrFI	CCNGG	2 cut(s)	41, 152
BmsI	GCATC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 40, 173, 207, 257
Bse118I	RCCGGY	1 cut(s)	207
Bse1I	ACTGG	2 cut(s)	17, 328
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	2 cut(s)	36, 147
BseLI	CCNNNNNNNGG	5 cut(s)	12, 40, 173, 207, 257
BseNI	ACTGG	2 cut(s)	17, 328
BseX3I	CGGCCG	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	232
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	3 cut(s)	33, 207, 262
BshNI	GGYRCC	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	3 cut(s)	152, 208, 318
BslI	CCNNNNNNNGG	5 cut(s)	12, 40, 173, 207, 257
BsmAI	GTCTC	2 cut(s)	130, 266
BsnI	GGCC	3 cut(s)	33, 207, 262
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	190, 311
Bsp19I	CCATGG	1 cut(s)	55
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	3 cut(s)	33, 207, 262
BspLI	GGNNCC	2 cut(s)	32, 244
BspPI	GGATC	1 cut(s)	319
BspT104I	TTCGAA	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	17, 328
BssAI	RCCGGY	1 cut(s)	207
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	190, 311
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	160
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	63, 276
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	36, 147
BstKTI	GATC	2 cut(s)	193, 314
BstMAI	GTCTC	2 cut(s)	130, 266
BstMBI	GATC	2 cut(s)	190, 311
BstMCI	CGRYCG	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	39, 150
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BstZI	CGGCCG	1 cut(s)	205
BsuRI	GGCC	3 cut(s)	33, 207, 262
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	36, 147
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	4 cut(s)	10, 220, 263, 321
Cac8I	GCNNGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	31, 260
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	3 cut(s)	56, 168, 194
CviJI	RGCY	5 cut(s)	33, 44, 207, 262, 335
CviKI_1	RGCY	5 cut(s)	33, 44, 207, 262, 335
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	2 cut(s)	63, 276
DpnI	GATC	2 cut(s)	192, 313
DpnII	GATC	2 cut(s)	190, 311
EaeI	YGGCCR	1 cut(s)	205
EagI	CGGCCG	1 cut(s)	205
EclXI	CGGCCG	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	59, 171, 197
FaiI	YATR	6 cut(s)	27, 57, 108, 129, 169, 195
FatI	CATG	3 cut(s)	55, 167, 193
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	2 cut(s)	23, 134
Fsp4HI	GCNGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	3 cut(s)	33, 207, 262
HapII	CCGG	3 cut(s)	152, 208, 318
Hin1II	CATG	3 cut(s)	59, 171, 197
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	3 cut(s)	152, 208, 318
HphI	GGTGA	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	1 cut(s)	112
HpyAV	CCTTC	5 cut(s)	84, 175, 179, 289, 325
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	2 cut(s)	159, 288
HpyCH4V	TGCA	1 cut(s)	213
HpyF3I	CTNAG	2 cut(s)	63, 276
HpySE526I	ACGT	2 cut(s)	159, 288
Hsp92II	CATG	3 cut(s)	59, 171, 197
Kzo9I	GATC	2 cut(s)	190, 311
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	2 cut(s)	159, 288
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	2 cut(s)	192, 313
MboI	GATC	2 cut(s)	190, 311
MboII	GAAGA	1 cut(s)	306
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	2 cut(s)	94, 345
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	2 cut(s)	174, 273
MroXI	GAANNNNTTC	2 cut(s)	20, 335
MspI	CCGG	3 cut(s)	152, 208, 318
MspR9I	CCNGG	2 cut(s)	41, 152
MvaI	CCWGG	1 cut(s)	41
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	55
NdeII	GATC	2 cut(s)	190, 311
NlaIII	CATG	3 cut(s)	59, 171, 197
NlaIV	GGNNCC	2 cut(s)	32, 244
NmuCI	GTSAC	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	88
PdmI	GAANNNNTTC	2 cut(s)	20, 335
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	32, 244
PspPI	GGNCC	2 cut(s)	31, 260
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	2 cut(s)	190, 311
Sau96I	GGNCC	2 cut(s)	31, 260
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	41, 152
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	5 cut(s)	162, 166, 284, 291, 300
SfaNI	GCATC	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	88
Sse9I	AATT	2 cut(s)	94, 345
SsiI	CCGC	1 cut(s)	34
StyD4I	CCNGG	2 cut(s)	39, 150
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	2 cut(s)	162, 291
TaqI	TCGA	1 cut(s)	88
TasI	AATT	2 cut(s)	94, 345
TauI	GCSGC	1 cut(s)	36
TscAI	CASTG	4 cut(s)	17, 220, 270, 328
TseFI	GTSAC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	3 cut(s)	83, 144, 218
TspRI	CASTG	4 cut(s)	17, 220, 270, 328
XapI	RAATTY	1 cut(s)	345
XmnI	GAANNNNTTC	2 cut(s)	20, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.