Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Reverse (-)

1117901 .. 1118431

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1015400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCCCTTTCACTGGAAATGTTTCTATCGGGGCCCCATCTTGGCTGGCACTTGCCATAGTGCTAAGATGAACAAAACAATCATCGTTCGAAGGACTTATCTACATTATATCAAGAAATATCAGAGATATGAAAAGAGACATTCCAACATCCCGGCACACGTATCTCCATGCTTCCATGTGAAGGAAGGAGATCATGTTACCATCGGCCAGTGCAGGCCACTGTCCAAGACAAAGAGGTTCAACGTCTTGAAGGTGACTCCTGCTGGATCTTCCGGCACTGGCAGGAAGGCTTTTGCTGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

102

Amino Acids

11.56

Weight (kDa)

10.34

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17	PF00366	16 - 84	1.5e-29	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	274
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	300
AfiI	CCNNNNNNNGG	3 cut(s)	12, 40, 181
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	241, 250
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	3 cut(s)	31, 205, 215
ApaI	GGGCCC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	31, 32
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	265
AsuII	TTCGAA	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	35
BccI	CCATC	2 cut(s)	44, 209
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	31, 32
BmiI	GGNNCC	3 cut(s)	32, 33, 34
BmrFI	CCNGG	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 40, 181
Bse1I	ACTGG	3 cut(s)	17, 208, 283
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	3 cut(s)	12, 40, 181
BseNI	ACTGG	3 cut(s)	17, 208, 283
BseSI	GKGCMC	1 cut(s)	35
BsgI	GTGCAG	1 cut(s)	232
BshFI	GGCC	3 cut(s)	33, 207, 217
BsiSI	CCGG	2 cut(s)	152, 273
BslI	CCNNNNNNNGG	3 cut(s)	12, 40, 181
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	3 cut(s)	33, 207, 217
Bsp119I	TTCGAA	1 cut(s)	88
Bsp120I	GGGCCC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	190, 266
BspANI	GGCC	3 cut(s)	33, 207, 217
BspLI	GGNNCC	3 cut(s)	32, 33, 34
BspPI	GGATC	1 cut(s)	274
BspT104I	TTCGAA	1 cut(s)	88
BsrI	ACTGG	3 cut(s)	17, 208, 283
BssMI	GATC	2 cut(s)	190, 266
Bst4CI	ACNGT	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	160
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	46, 215
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	2 cut(s)	193, 269
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	2 cut(s)	190, 266
BstSCI	CCNGG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	33, 207, 217
BtsCI	GGATG	1 cut(s)	147
BtsIMutI	CAGTG	4 cut(s)	10, 215, 218, 276
Cac8I	GCNNGC	2 cut(s)	46, 215
Cfr13I	GGNCC	2 cut(s)	31, 32
CviAII	CATG	3 cut(s)	168, 176, 194
CviJI	RGCY	5 cut(s)	33, 44, 207, 217, 290
CviKI_1	RGCY	5 cut(s)	33, 44, 207, 217, 290
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	192, 268
DpnII	GATC	2 cut(s)	190, 266
EaeI	YGGCCR	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	35
EcoO109I	RGGNCCY	2 cut(s)	31, 32
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	3 cut(s)	171, 179, 197
FaiI	YATR	6 cut(s)	57, 108, 129, 169, 177, 195
FatI	CATG	3 cut(s)	167, 175, 193
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	33, 207, 217
HapII	CCGG	2 cut(s)	152, 273
Hin1II	CATG	3 cut(s)	171, 179, 197
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	2 cut(s)	152, 273
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	112, 247
HpyAV	CCTTC	5 cut(s)	84, 175, 179, 244, 280
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	2 cut(s)	159, 243
HpyCH4V	TGCA	1 cut(s)	213
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	2 cut(s)	159, 243
Hsp92II	CATG	3 cut(s)	171, 179, 197
Kzo9I	GATC	2 cut(s)	190, 266
MaeII	ACGT	2 cut(s)	159, 243
MaeIII	GTNAC	2 cut(s)	196, 253
MalI	GATC	2 cut(s)	192, 268
MboI	GATC	2 cut(s)	190, 266
MboII	GAAGA	1 cut(s)	261
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	20
MspI	CCGG	2 cut(s)	152, 273
MspR9I	CCNGG	1 cut(s)	152
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	2 cut(s)	190, 266
NlaIII	CATG	3 cut(s)	171, 179, 197
NlaIV	GGNNCC	3 cut(s)	32, 33, 34
NmuCI	GTSAC	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	20
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	32, 33, 34
PspOMI	GGGCCC	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	31, 32
PsuI	RGATCY	1 cut(s)	266
Sau3AI	GATC	2 cut(s)	190, 266
Sau96I	GGNCC	2 cut(s)	31, 32
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	4 cut(s)	162, 239, 246, 255
SfuI	TTCGAA	1 cut(s)	88
Sse9I	AATT	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	2 cut(s)	162, 246
TaqI	TCGA	1 cut(s)	88
TasI	AATT	1 cut(s)	300
TscAI	CASTG	4 cut(s)	17, 215, 225, 283
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	83, 144
TspRI	CASTG	4 cut(s)	17, 215, 225, 283
XapI	RAATTY	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.