MD02G1016000.v1.1

Belongs to the universal ribosomal protein uS17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
1201620 .. 1201850
231 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1016000.v1.1.491

Sequence Viewer

Length: 231 bp
ATGTGCTTTTTGCATCTTACAGGGACTTACATTGATAAGAAATGCCCTTTCACTGGAAATGTTTCTATGAGGGGCCCCATCTTGGCTGGCACTTGCCATAGTGCTAAGATGAACAAAACAATCATCGTTCGAAGGACTTATCTACATTATATCAAGAAATATCAGAGGTACAACGTTCGCATTTATTTTTTGTCATTTTCTATTGTATCGGCTGTCATTTTGGAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

8.84

Weight (kDa)

9.9

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17_N PF16205 7 - 28 8.2e-10 Ribosomal_S17 N-terminal
Ribosomal_S17 PF00366 30 - 59 1.8e-07 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 174
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 53, 82
AoxI GGCC 1 cut(s) 73
ApaI GGGCCC 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 73, 74
AsuII TTCGAA 1 cut(s) 130
BaeGI GKGCMC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 77
BccI CCATC 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 73, 74
BmiI GGNNCC 3 cut(s) 74, 75, 76
BmsI GCATC 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 82
Bse1I ACTGG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 53, 82
BseNI ACTGG 1 cut(s) 58
BseSI GKGCMC 1 cut(s) 77
BshFI GGCC 1 cut(s) 75
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 53, 82
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 130
Bsp120I GGGCCC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 77
BspANI GGCC 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 74, 75, 76
BspT104I TTCGAA 1 cut(s) 130
BsrI ACTGG 1 cut(s) 58
BstBI TTCGAA 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 73, 74
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 3 cut(s) 75, 86, 212
CviKI_1 RGCY 3 cut(s) 75, 86, 212
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 77
EcoO109I RGGNCCY 2 cut(s) 73, 74
EcoT38I GRGCYC 1 cut(s) 77
FaiI YATR 3 cut(s) 68, 99, 150
FaqI GGGAC 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 75
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 174
LpnPI CCDG 3 cut(s) 6, 39, 72
LweI GCATC 1 cut(s) 22
MaeII ACGT 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 1 cut(s) 226
MnlI CCTC 2 cut(s) 63, 159
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 1 cut(s) 229
NlaIV GGNNCC 3 cut(s) 74, 75, 76
NspV TTCGAA 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 61
Psp1406I AACGTT 1 cut(s) 174
PspN4I GGNNCC 3 cut(s) 74, 75, 76
PspOMI GGGCCC 1 cut(s) 73
PspPI GGNCC 2 cut(s) 73, 74
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 229
Sau96I GGNCC 2 cut(s) 73, 74
SduI GDGCHC 1 cut(s) 77
SetI ASST 2 cut(s) 170, 177
SfaNI GCATC 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 130
SgeI CNNG 6 cut(s) 33, 66, 94, 99, 105, 166
Sse9I AATT 1 cut(s) 226
TaiI ACGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 130
TasI AATT 1 cut(s) 226
Tru1I TTAA 1 cut(s) 229
Tru9I TTAA 1 cut(s) 229
TscAI CASTG 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 125
TspRI CASTG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.