pycom15g11700

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001732
Physical Location & Seq
Forward (+)
7930500 .. 7932250
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g11700.5

Sequence Viewer

Length: 678 bp
ATGAGGCAGAAATGTAATTTCACACAACCAAATTTTATTTTATTTTTCTTCAAAGTATCATCTATATGTAATTCTAACATATCTCTAATTAAAAATAAAAAAATAAAAAATAAAGGATATTTTATAGGGTTTTGTTGCTCATTCAGTCTCTCTGCTTACGGCGTCGGCTTCCACCACTCTACTCGAACCAGCTCCAAAATGGCGGAACAGACCGAGAAGGCTTTCTTGAAGCAGCCCAAGGTTTTCCTCAGCTCAAAGAAGACAGGGAAGGGAAAGAGGCCTGGAAAGGGAGGCAATCGCTTCTGGAAGAGTGTTGGGTTGGGATTCAAGACCCCCCGAGATGCTATCGACGGAACATACATTGACAAGAAGTGCCCTTTCACTGGCAACGTCTCCATCAGGGGTCGTATTCTCTCTGGTACTTGCCACAGTGCTAAGATGTCAAGGACCATTATTGTTCGCCGCAACTACCTTCATTATATTAAAAAATACCAGAGATACGAGAAAAGGCACTCAAACATTCCGGCTCACGTTTCACCTTGCTTCCGTGTGAAAGAGGGAGATTATGTCATTATTGGCCAGTGCAGGCCATTGTCAAAGACAGTGAGGTTTAATGTGTTGAAGGTGACTCCAGCCGGTTCATCTGGAACTGGGAAGAAAGCATTCACTGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

226

Amino Acids

25.33

Weight (kDa)

10.43

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 203, 463
AcoI YGGCCR 1 cut(s) 577
AcsI RAATTY 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 1 cut(s) 421
AfiI CCNNNNNNNGG 2 cut(s) 287, 383
AgsI TTSAA 4 cut(s) 52, 229, 328, 622
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 2 cut(s) 192, 252
AluI AGCT 2 cut(s) 192, 252
Alw26I GTCTC 2 cut(s) 152, 397
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 3 cut(s) 278, 577, 587
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 31
Asp700I GAANNNNTTC 2 cut(s) 221, 662
AspS9I GGNCC 1 cut(s) 447
AsuHPI GGTGA 2 cut(s) 528, 637
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 1 cut(s) 447
BaeGI GKGCMC 1 cut(s) 377
BalI TGGCCA 1 cut(s) 579
BbsI GAAGAC 1 cut(s) 266
BbvCI CCTCAGC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 404
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 152, 397
BisI GCNGC 2 cut(s) 233, 463
BlsI GCNGC 2 cut(s) 234, 464
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 447
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 447
BmrFI CCNGG 1 cut(s) 282
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 660
BpiI GAAGAC 1 cut(s) 266
BpmI CTGGAG 1 cut(s) 615
Bpu10I CCTNAGC 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 383
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 4 cut(s) 388, 580, 655, 673
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 287, 383
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 4 cut(s) 388, 580, 655, 673
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 604
BshFI GGCC 3 cut(s) 280, 579, 589
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 2 cut(s) 524, 636
BslI CCNNNNNNNGG 2 cut(s) 287, 383
BsmAI GTCTC 2 cut(s) 152, 397
BsmBI CGTCTC 1 cut(s) 397
BsmI GAATGC 1 cut(s) 662
BsnI GGCC 3 cut(s) 280, 579, 589
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 377
BspACI CCGC 2 cut(s) 203, 463
BspANI GGCC 3 cut(s) 280, 579, 589
BspCNI CTCAG 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 635
BsrI ACTGG 4 cut(s) 388, 580, 655, 673
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 237
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 431, 604
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 587
BstDEI CTNAG 2 cut(s) 248, 435
BstMAI GTCTC 2 cut(s) 152, 397
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 266
BsuRI GGCC 3 cut(s) 280, 579, 589
BtsIMutI CAGTG 5 cut(s) 381, 436, 587, 609, 666
Cac8I GCNNGC 1 cut(s) 587
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 1 cut(s) 447
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 420
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 2 cut(s) 248, 435
EaeI YGGCCR 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
EciI GGCGGA 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 237
Eco147I AGGCCT 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 397
FaiI YATR 8 cut(s) 65, 67, 80, 125, 358, 480, 567, 676
FalI AAGNNNNNCTT 2 cut(s) 209, 241
Fnu4HI GCNGC 2 cut(s) 233, 463
Fsp4HI GCNGC 2 cut(s) 233, 463
GluI GCNGC 2 cut(s) 233, 463
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 3 cut(s) 280, 579, 589
HapII CCGG 2 cut(s) 524, 636
HgaI GACGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 162
HinfI GANTC 2 cut(s) 324, 628
HpaII CCGG 2 cut(s) 524, 636
HphI GGTGA 2 cut(s) 528, 637
Hpy188III TCNNGA 4 cut(s) 226, 304, 328, 645
Hpy99I CGWCG 2 cut(s) 167, 353
HpyAV CCTTC 4 cut(s) 211, 262, 482, 616
HpyCH4III ACNGT 2 cut(s) 431, 604
HpyCH4IV ACGT 2 cut(s) 390, 531
HpyCH4V TGCA 1 cut(s) 585
HpyF3I CTNAG 2 cut(s) 248, 435
HpySE526I ACGT 2 cut(s) 390, 531
Hsp92I GRCGYC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 197
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 331
MaeII ACGT 2 cut(s) 390, 531
MaeIII GTNAC 1 cut(s) 625
MboII GAAGA 4 cut(s) 40, 271, 319, 667
MhlI GDGCHC 1 cut(s) 377
MlsI TGGCCA 1 cut(s) 579
MluCI AATT 4 cut(s) 16, 31, 70, 87
MluNI TGGCCA 1 cut(s) 579
MlyI GAGTC 1 cut(s) 622
MnlI CCTC 5 cut(s) 257, 270, 284, 550, 600
Mox20I TGGCCA 1 cut(s) 579
MroXI GAANNNNTTC 2 cut(s) 221, 662
MscI TGGCCA 1 cut(s) 579
MseI TTAA 3 cut(s) 90, 483, 612
MslI CAYNNNNRTG 1 cut(s) 64
Msp20I TGGCCA 1 cut(s) 579
MspI CCGG 2 cut(s) 524, 636
MspR9I CCNGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 662
MvaI CCWGG 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 625
PceI AGGCCT 1 cut(s) 280
PctI GAATGC 1 cut(s) 662
PdmI GAANNNNTTC 2 cut(s) 221, 662
PfeI GAWTC 1 cut(s) 324
PkrI GCNGC 2 cut(s) 234, 464
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspPI GGNCC 1 cut(s) 447
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
RseI CAYNNNNRTG 1 cut(s) 64
SaqAI TTAA 3 cut(s) 90, 483, 612
SatI GCNGC 2 cut(s) 233, 463
Sau96I GGNCC 1 cut(s) 447
SchI GAGTC 1 cut(s) 622
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 377
SetI ASST 9 cut(s) 194, 243, 254, 393, 474, 534, 541, 611, 627
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 64
Sse9I AATT 4 cut(s) 16, 31, 70, 87
SseBI AGGCCT 1 cut(s) 280
SsiI CCGC 2 cut(s) 203, 463
StuI AGGCCT 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 431, 604
TaiI ACGT 2 cut(s) 393, 534
TaqI TCGA 2 cut(s) 184, 348
TaqII GACCGA 1 cut(s) 227
TasI AATT 4 cut(s) 16, 31, 70, 87
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 3 cut(s) 90, 483, 612
Tru9I TTAA 3 cut(s) 90, 483, 612
TscAI CASTG 5 cut(s) 388, 436, 587, 609, 673
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 2 cut(s) 464, 630
TspGWI ACGGA 2 cut(s) 366, 536
TspRI CASTG 5 cut(s) 388, 436, 587, 609, 673
VpaK11BI GGWCC 1 cut(s) 447
XapI RAATTY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmnI GAANNNNTTC 2 cut(s) 221, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.