Prupe.7G255900_v2.0.a1

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001732
Physical Location & Seq
Reverse (-)
21447015 .. 21449442
2428 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G255900.1

Sequence Viewer

Length: 480 bp
ATGGCCGAACAGACTGAGAAGGCGTTTCTGAAGCAGCCCAAGGTGTTCATCAGCTCGAAGAAGTCTGGGAAGGGGAAGAGACCTGGAAAGGGTGGAAACCGTTTCTGGAAGAGCGTTGGGCTTGGTTTCAAGACCCCCAGGGAAGCCATTGAAGGGACTTATATTGATAAGAAATGCCCATTCACTGGAAATGTTTCTATCAGGGGCCGTATCTTGGCTGGCACTTGCCACAGTGCTAAGATGAACAAAACAATCATCATTCGACGGAATTATCTACATTACATCAAGAAATATCAAAGGTATGAGAAGAGACACTCGAACATACCTGCGCATGTGTCTCCGTGCTTCCGTGTGAAAGAAGGGGATCATGTTACCATCGGACAGTGCAGGCCATTGTCCAAGACTAAGAGGTTCAATGTCTTGAAGGTGACCCCTGCTGGATCTTCTGGTGCTGGCAAGAAGGCTTTCACTGGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

160

Amino Acids

17.77

Weight (kDa)

10.54

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 330
Acc36I ACCTGC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 185
AclWI GGATC 2 cut(s) 372, 448
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 50
AfiI CCNNNNNNNGG 4 cut(s) 89, 153, 185, 214
AgsI TTSAA 4 cut(s) 130, 152, 415, 424
AjnI CCWGG 2 cut(s) 82, 137
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Alw26I GTCTC 3 cut(s) 73, 304, 342
AlwI GGATC 2 cut(s) 372, 448
AoxI GGCC 3 cut(s) 3, 205, 389
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 474
Asp700I GAANNNNTTC 2 cut(s) 193, 464
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 439
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 2 cut(s) 84, 139
BcoDI GTCTC 3 cut(s) 73, 304, 342
BfuAI ACCTGC 1 cut(s) 334
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 2 cut(s) 84, 139
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 2 cut(s) 84, 139
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 39, 137, 138
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 153, 185, 214
Bse1I ACTGG 2 cut(s) 190, 475
BseBI CCWGG 2 cut(s) 84, 139
BseDI CCNNGG 3 cut(s) 39, 137, 138
BseLI CCNNNNNNNGG 4 cut(s) 89, 153, 185, 214
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 2 cut(s) 190, 475
BseXI GCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 406
BshFI GGCC 3 cut(s) 5, 207, 391
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 4 cut(s) 89, 153, 185, 214
BsmAI GTCTC 3 cut(s) 73, 304, 342
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 3 cut(s) 5, 207, 391
Bso31I GGTCTC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 364, 440
BspANI GGCC 3 cut(s) 5, 207, 391
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 206
BspMI ACCTGC 1 cut(s) 334
BspPI GGATC 2 cut(s) 372, 448
BspQI GCTCTTC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 73
BsrI ACTGG 2 cut(s) 190, 475
BssECI CCNNGG 3 cut(s) 39, 137, 138
BssMI GATC 2 cut(s) 364, 440
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 84, 139
Bst4CI ACNGT 3 cut(s) 101, 233, 384
Bst6I CTCTTC 3 cut(s) 71, 104, 302
BstC8I GCNNGC 3 cut(s) 220, 389, 454
BstDEI CTNAG 3 cut(s) 15, 237, 405
BstEII GGTNACC 1 cut(s) 427
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 2 cut(s) 367, 443
BstMAI GTCTC 3 cut(s) 73, 304, 342
BstMBI GATC 2 cut(s) 364, 440
BstNI CCWGG 2 cut(s) 84, 139
BstNSI RCATGY 1 cut(s) 335
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 82, 137
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BsuRI GGCC 3 cut(s) 5, 207, 391
BtsIMutI CAGTG 4 cut(s) 183, 238, 389, 468
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 3 cut(s) 220, 389, 454
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 205
CviAII CATG 2 cut(s) 332, 368
CviJI RGCY 9 cut(s) 5, 37, 54, 121, 146, 207, 218, 391, 464
CviKI_1 RGCY 9 cut(s) 5, 37, 54, 121, 146, 207, 218, 391, 464
DdeI CTNAG 3 cut(s) 15, 237, 405
DpnI GATC 2 cut(s) 366, 442
DpnII GATC 2 cut(s) 364, 440
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 71, 104, 302
EarI CTCTTC 3 cut(s) 71, 104, 302
Eco130I CCWWGG 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 50
Eco91I GGTNACC 1 cut(s) 427
EcoO65I GGTNACC 1 cut(s) 427
EcoRII CCWGG 2 cut(s) 82, 137
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 2 cut(s) 335, 371
FaiI YATR 5 cut(s) 162, 303, 323, 333, 369
FaqI GGGAC 1 cut(s) 169
FatI CATG 2 cut(s) 331, 367
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
FspI TGCGCA 1 cut(s) 330
GlaI GCGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 35
HaeIII GGCC 3 cut(s) 5, 207, 391
HhaI GCGC 1 cut(s) 331
Hin1II CATG 2 cut(s) 335, 371
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HphI GGTGA 1 cut(s) 439
Hpy188I TCNGA 2 cut(s) 30, 380
Hpy188III TCNNGA 4 cut(s) 106, 130, 286, 421
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 6 cut(s) 13, 64, 146, 353, 418, 454
HpyCH4III ACNGT 3 cut(s) 101, 233, 384
HpyCH4V TGCA 1 cut(s) 387
HpyF3I CTNAG 3 cut(s) 15, 237, 405
Hsp92II CATG 2 cut(s) 335, 371
HspAI GCGC 1 cut(s) 329
Kzo9I GATC 2 cut(s) 364, 440
LguI GCTCTTC 1 cut(s) 104
Lsp1109I GCAGC 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 370, 427
MalI GATC 2 cut(s) 366, 442
MboI GATC 2 cut(s) 364, 440
MboII GAAGA 5 cut(s) 70, 88, 121, 319, 435
MflI RGATCY 1 cut(s) 440
MluCI AATT 2 cut(s) 268, 474
MnlI CCTC 1 cut(s) 402
MroXI GAANNNNTTC 2 cut(s) 193, 464
MspR9I CCNGG 2 cut(s) 84, 139
MvaI CCWGG 2 cut(s) 84, 139
NdeII GATC 2 cut(s) 364, 440
NlaIII CATG 2 cut(s) 335, 371
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 427
NsbI TGCGCA 1 cut(s) 330
NspI RCATGY 1 cut(s) 335
PasI CCCWGGG 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 104
PdmI GAANNNNTTC 2 cut(s) 193, 464
PflMI CCANNNNNTGG 1 cut(s) 185
PkrI GCNGC 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 82, 137
PspEI GGTNACC 1 cut(s) 427
PspGI CCWGG 2 cut(s) 82, 137
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 205
PsuI RGATCY 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 104
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 364, 440
Sau96I GGNCC 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 84, 139
SetI ASST 7 cut(s) 45, 56, 85, 302, 328, 413, 429
Sse9I AATT 2 cut(s) 268, 474
StyD4I CCNGG 2 cut(s) 82, 137
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 3 cut(s) 101, 233, 384
TaqI TCGA 3 cut(s) 56, 262, 317
TasI AATT 2 cut(s) 268, 474
TscAI CASTG 4 cut(s) 190, 238, 389, 475
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 37, 257
TspGWI ACGGA 3 cut(s) 280, 330, 338
TspRI CASTG 4 cut(s) 190, 238, 389, 475
Van91I CCANNNNNTGG 1 cut(s) 185
XapI RAATTY 1 cut(s) 474
XceI RCATGY 1 cut(s) 335
XmnI GAANNNNTTC 2 cut(s) 193, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.