Rorug03G0243700

Belongs to the universal ribosomal protein uS17 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
22763991 .. 22767555
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0243700.1

Sequence Viewer

Length: 1761 bp
ATGACCCATTTGCATAGCCTCAGAAATGCATCTATTCTCAAATGGGTTTCTTCAAATATTGCTCAAAACCACCTTAGATCATCAAGAACCCCACTTCAGCCAATCGGGTCTTTCCCCAATTCTCATGCCATCGGGCTTTACAGTACCAAAACAGCTCTTGAAGCTGAAAACTTGGATATAACTTCGACTTCTAGTGGAAAAAATGGAGGGGGGATTTCTAGAGTTATTCGAAAAGAAGCCCAGGCTGCATTGTTGGAGTATTTGCACTGTACTAGGGGCTTGCAGTTCATGGATGCAGAGAATATGAGTAAAAACTCCCCGCAGTTTCTCAACAAGCTTTTAAGAAGTGTTGATGGTGAAACTGATAATGAAATTGGGGGCTTGATTTCCCGGTATTTGAGGTACCACCCCATTAATGAATTTGAGCCTTTCTTTGAGAGCTTGGGATTAAAACCATCAGAGTATATCCCCCGTCTTCCTCGGAATTTGATGTTCTTGACCGATGATGGTTTGTTGCTTCACAACTATACTGTTTTGTGTAGTTATGGGGTTTCACGTAGCAAGATAGGAAAGATTTATAAAGAAGCAACAGAAGTGTTTCGATATGATTTTGAGGTGTTGCTGTCGAAACTTCAGGCTTATGAAGAACTAGGTCTCAGCCAATTTGCTTTAGTTAAGTTTATTGTTTGCAGCCCTTATATTTTAGTTGGGGATGTAAATGTGCCATTTGTTAAGGTACTAGAAAAGTTGAAGAGTTTGGGGTTTGAGACCTATTGGATTGAAAGGAATTTATCAGAAGAGAATATTTATAGTTGGAGCCGGATGCTTGAAGTGCTAAGGTTGTTTAATGAGATGGGTTGCAGCAACGTGCAGTTGGTTGAATTACTTGGCCAGCATCCGGATATTTTATTTGAGAGTTCAGGAGAAACGACACTGCTGTTAATTGGGTTCTTACTGAAGTTTGGATCCACAAGGAGCCAAATATGTTCAATGTTTCTGCAGTTTCCACAAATTCAGATTATGCAATTTGTTCTGAATTTGAGGAAATGTGTTTTGGTCCTAAATGAGATTGAGATGGAGGTTGCAGAGATTCAGATGATTGTTTGTTCACACCCCCTGCTACTGGGTTCGTGTGCTCTGAAAAGCACTAACAGCTTACTTTCTTACTTGAAGATTGGGAAGAAGCGTCTGTCTAGGTACATACAGGAGAACCCTGAAGCATTAAAGAAATGGGTTCTAGGTAGAAGAGTTGAGCCACTTCCAGACTCGGAAGAGGACTCAAAGGGAAAGAGAATTAAGTTCTTGTTAGACATAGGATTTGTAGAGAACTCGAACAAAATGAAAGAAGCACTAAAGCTATTTCGAGGCAAGGGAGGGGAACTTCAAGACAGATTTGATTGTATAGTGAATGCTGGTTTAAATCGCCAGGATGTCTGTAAAATGATTAAAGTATCCCCTCAAATTCTTAACCAGAAAAGGGATGTGTTACAAATGAAGATTGATGTTCTTGTAAATCATCTGGGTTATCCTGTATCATCTTTGGTGAACTTCCCATCATATCTATCCTATACAACTCAAAGGGTCAAGCTCAGAGTATTCATGTACAATTGGCTAACTGGTCAAGGAACAATAGCCCCTACACTTGCCTTGAGCACTGTCGTTGCAATGGCAGAGAAAACATTTATATCGCAATATGTAAATCATCATCCTTGTGGTCCTCAAGTTTGGCAGGAATTGAAGGGTAAAATGTATTCTTTATAA

Protein Analysis

586

Amino Acids

66.66

Weight (kDa)

8.89

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 279 - 442 3.4e-09 mTERF
mTERF PF02536 453 - 561 1.7e-13 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 579, 1759
Acc65I GGTACC 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 402
AccIII TCCGGA 1 cut(s) 898
AciI CCGC 1 cut(s) 320
AclWI GGATC 2 cut(s) 960, 973
AcoI YGGCCR 1 cut(s) 889
AcsI RAATTY 6 cut(s) 419, 484, 787, 1011, 1036, 1461
AcuI CTGAAG 4 cut(s) 80, 617, 977, 1236
AfaI GTAC 6 cut(s) 145, 271, 404, 738, 1199, 1604
AfiI CCNNNNNNNGG 3 cut(s) 898, 1123, 1477
AjnI CCWGG 2 cut(s) 240, 1425
AjuI GAANNNNNNNTTGG 2 cut(s) 1037, 1069
AluBI AGCT 7 cut(s) 155, 164, 337, 441, 1155, 1357, 1588
AluI AGCT 7 cut(s) 155, 164, 337, 441, 1155, 1357, 1588
Alw21I GWGCWC 2 cut(s) 1138, 1655
Alw26I GTCTC 2 cut(s) 659, 761
AlwI GGATC 2 cut(s) 960, 973
Aor13HI TCCGGA 1 cut(s) 898
AoxI GGCC 1 cut(s) 889
ApeKI GCWGC 3 cut(s) 245, 690, 861
ApoI RAATTY 6 cut(s) 419, 484, 787, 1011, 1036, 1461
ArsI GACNNNNNNTTYG 2 cut(s) 1301, 1333
AseI ATTAAT 1 cut(s) 414
Asp700I GAANNNNTTC 1 cut(s) 597
Asp718I GGTACC 1 cut(s) 402
AspS9I GGNCC 2 cut(s) 1057, 1715
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 2 cut(s) 368, 1555
AsuII TTCGAA 1 cut(s) 229
AvaII GGWCC 2 cut(s) 1057, 1715
BalI TGGCCA 1 cut(s) 891
BamHI GGATCC 1 cut(s) 965
BanI GGYRCC 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 467
Bbv12I GWGCWC 2 cut(s) 1138, 1655
BbvI GCAGC 3 cut(s) 232, 702, 873
BccI CCATC 7 cut(s) 137, 347, 463, 500, 847, 1069, 1561
BciT130I CCWGG 2 cut(s) 242, 1427
BciVI GTATCC 1 cut(s) 1462
BcnI CCSGG 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 659, 761
BfaI CTAG 7 cut(s) 192, 219, 273, 650, 740, 1194, 1238
BfmI CTRYAG 1 cut(s) 998
BfuI GTATCC 1 cut(s) 1462
BisI GCNGC 3 cut(s) 246, 691, 862
BlsI GCNGC 3 cut(s) 247, 692, 863
Bme1390I CCNGG 3 cut(s) 242, 391, 1427
Bme18I GGWCC 2 cut(s) 1057, 1715
BmgT120I GGNCC 2 cut(s) 1057, 1715
BmiI GGNNCC 4 cut(s) 404, 818, 967, 977
BmrFI CCNGG 3 cut(s) 242, 391, 1427
BmrI ACTGGG 1 cut(s) 1133
BmsI GCATC 4 cut(s) 38, 283, 813, 904
BmuI ACTGGG 1 cut(s) 1133
BpiI GAAGAC 1 cut(s) 467
Bpu10I CCTNAGC 1 cut(s) 836
Bpu14I TTCGAA 1 cut(s) 229
BpuEI CTTGAG 2 cut(s) 1669, 1704
BpuMI CCSGG 1 cut(s) 391
BsaAI YACGTR 1 cut(s) 557
BsaI GGTCTC 2 cut(s) 659, 761
BsaJI CCNNGG 2 cut(s) 240, 479
BsaWI WCCGGW 1 cut(s) 898
Bsc4I CCNNNNNNNGG 3 cut(s) 898, 1123, 1477
Bse1I ACTGG 2 cut(s) 1128, 1621
Bse3DI GCAATG 1 cut(s) 1671
BseAI TCCGGA 1 cut(s) 898
BseBI CCWGG 2 cut(s) 242, 1427
BseDI CCNNGG 2 cut(s) 240, 479
BseGI GGATG 7 cut(s) 298, 718, 828, 895, 1435, 1486, 1705
BseLI CCNNNNNNNGG 3 cut(s) 898, 1123, 1477
BseMI GCAATG 1 cut(s) 1671
BseMII CTCAG 3 cut(s) 34, 670, 1603
BseNI ACTGG 2 cut(s) 1128, 1621
BseXI GCAGC 3 cut(s) 232, 702, 873
BsgI GTGCAG 1 cut(s) 890
BshFI GGCC 1 cut(s) 891
BshNI GGYRCC 1 cut(s) 402
BsiHKAI GWGCWC 2 cut(s) 1138, 1655
BsiSI CCGG 3 cut(s) 391, 820, 899
BslI CCNNNNNNNGG 3 cut(s) 898, 1123, 1477
BsmAI GTCTC 2 cut(s) 659, 761
BsmI GAATGC 1 cut(s) 1414
BsnI GGCC 1 cut(s) 891
Bso31I GGTCTC 2 cut(s) 659, 761
Bsp119I TTCGAA 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 1138, 1655
Bsp13I TCCGGA 1 cut(s) 898
Bsp1407I TGTACA 1 cut(s) 1602
Bsp143I GATC 2 cut(s) 77, 965
BspACI CCGC 1 cut(s) 320
BspANI GGCC 1 cut(s) 891
BspCNI CTCAG 3 cut(s) 33, 669, 1602
BspEI TCCGGA 1 cut(s) 898
BspLI GGNNCC 4 cut(s) 404, 818, 967, 977
BspMAI CTGCAG 1 cut(s) 1002
BspPI GGATC 2 cut(s) 960, 973
BspT104I TTCGAA 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 402
BspTNI GGTCTC 2 cut(s) 659, 761
BsrDI GCAATG 1 cut(s) 1671
BsrGI TGTACA 1 cut(s) 1602
BsrI ACTGG 2 cut(s) 1128, 1621
BssECI CCNNGG 2 cut(s) 240, 479
BssMI GATC 2 cut(s) 77, 965
Bst2UI CCWGG 2 cut(s) 242, 1427
Bst4CI ACNGT 4 cut(s) 143, 269, 532, 1657
Bst6I CTCTTC 4 cut(s) 746, 792, 1240, 1266
BstAUI TGTACA 1 cut(s) 1602
BstBAI YACGTR 1 cut(s) 557
BstBI TTCGAA 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 281, 893
BstDEI CTNAG 5 cut(s) 20, 74, 656, 836, 1589
BstF5I GGATG 7 cut(s) 298, 718, 828, 895, 1435, 1486, 1705
BstKTI GATC 2 cut(s) 80, 968
BstMAI GTCTC 2 cut(s) 659, 761
BstMBI GATC 2 cut(s) 77, 965
BstMWI GCNNNNNNNGC 4 cut(s) 161, 245, 832, 1152
BstNI CCWGG 2 cut(s) 242, 1427
BstSCI CCNGG 3 cut(s) 240, 389, 1425
BstSFI CTRYAG 1 cut(s) 998
BstV1I GCAGC 3 cut(s) 232, 702, 873
BstV2I GAAGAC 1 cut(s) 467
BstX2I RGATCY 1 cut(s) 965
BstYI RGATCY 1 cut(s) 965
BsuI GTATCC 1 cut(s) 1462
BsuRI GGCC 1 cut(s) 891
BtsCI GGATG 7 cut(s) 298, 718, 828, 895, 1435, 1486, 1705
BtsI GCAGTG 1 cut(s) 932
BtsIMutI CAGTG 3 cut(s) 265, 932, 1653
Cac8I GCNNGC 2 cut(s) 281, 893
Cfr13I GGNCC 2 cut(s) 1057, 1715
CseI GACGC 1 cut(s) 1175
Csp6I GTAC 6 cut(s) 144, 270, 403, 737, 1198, 1603
CviAII CATG 3 cut(s) 125, 289, 1600
CviQI GTAC 6 cut(s) 144, 270, 403, 737, 1198, 1603
DdeI CTNAG 5 cut(s) 20, 74, 656, 836, 1589
DpnI GATC 2 cut(s) 79, 967
DpnII GATC 2 cut(s) 77, 965
DraI TTTAAA 1 cut(s) 1419
EaeI YGGCCR 1 cut(s) 889
Eam1104I CTCTTC 4 cut(s) 746, 792, 1240, 1266
EarI CTCTTC 4 cut(s) 746, 792, 1240, 1266
Eco31I GGTCTC 2 cut(s) 659, 761
Eco47I GGWCC 2 cut(s) 1057, 1715
Eco57I CTGAAG 4 cut(s) 80, 617, 977, 1236
EcoRII CCWGG 2 cut(s) 240, 1425
EcoT22I ATGCAT 1 cut(s) 31
FaeI CATG 3 cut(s) 128, 292, 1603
FatI CATG 3 cut(s) 124, 288, 1599
FauI CCCGC 1 cut(s) 327
Fnu4HI GCNGC 3 cut(s) 246, 691, 862
FokI GGATG 7 cut(s) 305, 725, 835, 882, 1442, 1493, 1692
Fsp4HI GCNGC 3 cut(s) 246, 691, 862
FspBI CTAG 7 cut(s) 192, 219, 273, 650, 740, 1194, 1238
GluI GCNGC 3 cut(s) 246, 691, 862
HaeIII GGCC 1 cut(s) 891
HapII CCGG 3 cut(s) 391, 820, 899
HgaI GACGC 1 cut(s) 1175
Hin1II CATG 3 cut(s) 128, 292, 1603
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 3 cut(s) 1090, 1265, 1277
HpaII CCGG 3 cut(s) 391, 820, 899
HphI GGTGA 2 cut(s) 368, 1555
Hpy166II GTNNAC 2 cut(s) 1109, 1546
Hpy188III TCNNGA 8 cut(s) 84, 158, 219, 496, 899, 921, 1262, 1385
Hpy8I GTNNAC 2 cut(s) 1109, 1546
HpyAV CCTTC 1 cut(s) 1732
HpyCH4III ACNGT 4 cut(s) 143, 269, 532, 1657
HpyCH4IV ACGT 2 cut(s) 556, 867
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 245, 832, 1152
HpyF3I CTNAG 5 cut(s) 20, 74, 656, 836, 1589
HpySE526I ACGT 2 cut(s) 556, 867
Hsp92II CATG 3 cut(s) 128, 292, 1603
Kpn2I TCCGGA 1 cut(s) 898
KpnI GGTACC 1 cut(s) 406
Kzo9I GATC 2 cut(s) 77, 965
LmnI GCTCC 2 cut(s) 816, 975
Lsp1109I GCAGC 3 cut(s) 232, 702, 873
LweI GCATC 4 cut(s) 38, 283, 813, 904
MaeI CTAG 7 cut(s) 192, 219, 273, 650, 740, 1194, 1238
MaeII ACGT 2 cut(s) 556, 867
MaeIII GTNAC 1 cut(s) 1485
MalI GATC 2 cut(s) 79, 967
MboI GATC 2 cut(s) 77, 965
MfeI CAATTG 1 cut(s) 1606
MflI RGATCY 1 cut(s) 965
MhlI GDGCHC 2 cut(s) 1138, 1655
MlsI TGGCCA 1 cut(s) 891
MluNI TGGCCA 1 cut(s) 891
MlyI GAGTC 2 cut(s) 1259, 1271
MmeI TCCRAC 2 cut(s) 234, 794
Mox20I TGGCCA 1 cut(s) 891
Mph1103I ATGCAT 1 cut(s) 31
MroI TCCGGA 1 cut(s) 898
MroXI GAANNNNTTC 1 cut(s) 597
MscI TGGCCA 1 cut(s) 891
MslI CAYNNNNRTG 1 cut(s) 1710
Msp20I TGGCCA 1 cut(s) 891
MspI CCGG 3 cut(s) 391, 820, 899
MspR9I CCNGG 3 cut(s) 242, 391, 1427
MunI CAATTG 1 cut(s) 1606
Mva1269I GAATGC 1 cut(s) 1414
MvaI CCWGG 2 cut(s) 242, 1427
MwoI GCNNNNNNNGC 4 cut(s) 161, 245, 832, 1152
NciI CCSGG 1 cut(s) 391
NdeII GATC 2 cut(s) 77, 965
NlaIII CATG 3 cut(s) 128, 292, 1603
NlaIV GGNNCC 4 cut(s) 404, 818, 967, 977
NsiI ATGCAT 1 cut(s) 31
NspV TTCGAA 1 cut(s) 229
PctI GAATGC 1 cut(s) 1414
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 1 cut(s) 1090
PkrI GCNGC 3 cut(s) 247, 692, 863
PleI GAGTC 2 cut(s) 1259, 1271
PpsI GAGTC 2 cut(s) 1259, 1271
Ppu21I YACGTR 1 cut(s) 557
PshBI ATTAAT 1 cut(s) 414
PsiI TTATAA 2 cut(s) 579, 1759
Psp6I CCWGG 2 cut(s) 240, 1425
PspGI CCWGG 2 cut(s) 240, 1425
PspN4I GGNNCC 4 cut(s) 404, 818, 967, 977
PspPI GGNCC 2 cut(s) 1057, 1715
PstI CTGCAG 1 cut(s) 1002
PsuI RGATCY 1 cut(s) 965
RsaI GTAC 6 cut(s) 145, 271, 404, 738, 1199, 1604
RsaNI GTAC 6 cut(s) 144, 270, 403, 737, 1198, 1603
RseI CAYNNNNRTG 1 cut(s) 1710
SatI GCNGC 3 cut(s) 246, 691, 862
Sau3AI GATC 2 cut(s) 77, 965
Sau96I GGNCC 2 cut(s) 1057, 1715
SchI GAGTC 2 cut(s) 1259, 1271
ScrFI CCNGG 3 cut(s) 242, 391, 1427
SduI GDGCHC 2 cut(s) 1138, 1655
SfaNI GCATC 4 cut(s) 38, 283, 813, 904
SfcI CTRYAG 1 cut(s) 998
SfuI TTCGAA 1 cut(s) 229
SinI GGWCC 2 cut(s) 1057, 1715
SmiMI CAYNNNNRTG 1 cut(s) 1710
SmlI CTYRAG 2 cut(s) 1648, 1719
SmoI CTYRAG 2 cut(s) 1648, 1719
SsiI CCGC 1 cut(s) 320
SspI AATATT 2 cut(s) 58, 805
SspMI CTAG 7 cut(s) 192, 219, 273, 650, 740, 1194, 1238
StyD4I CCNGG 3 cut(s) 240, 389, 1425
TaaI ACNGT 4 cut(s) 143, 269, 532, 1657
TaiI ACGT 2 cut(s) 559, 870
TaqI TCGA 6 cut(s) 185, 229, 601, 626, 1331, 1363
TaqII GACCGA 1 cut(s) 515
TatI WGTACW 2 cut(s) 269, 1602
TfiI GAWTC 1 cut(s) 1090
TscAI CASTG 3 cut(s) 272, 939, 1660
TseI GCWGC 3 cut(s) 245, 690, 861
TspDTI ATGAA 7 cut(s) 277, 384, 432, 657, 1355, 1508, 1588
TspRI CASTG 3 cut(s) 272, 939, 1660
VpaK11BI GGWCC 2 cut(s) 1057, 1715
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 6 cut(s) 419, 484, 787, 1011, 1036, 1461
XbaI TCTAGA 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 7 cut(s) 192, 219, 273, 650, 740, 1194, 1238
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.