Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Reverse (-)

1777798 .. 1779871

Gene Structure 2074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46229

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCCGAACAGACCGAGAGAGCTTTTCTGAAGCAGCCCAAAGTGTTCTTGAGCTCGAAGAAAACAGGCAAGGGTAAGAGACCTGGAAAGGGAGGCAACCGATACTGGAAGAGCGTCGGGCTGGGCTTCAAGACTCCCAGGGATGCCATTGAAGGGACTTACATTGATAAGAAATGCCCATTCACTGGAAATGTGTCTATCAGGGGTCGTATCTTAGCTGGTACTTGCCACAGTGCTAAGATGAATAAAACCATTATTGTTCGACGGAATTACCTGCATTATATCAAAAAATACCAAAGATATGAGAAGAGGCACTCTAACATTGCTGCACACGTGTCTCCATGCTTCCGTGTGAAAGAAGGGGACCATGTTATCATCGGGCAGTGCAGGCCATTGTCCAAGACTAAGAGGTTCAATGTGCTGAAGGTGATTCCTGCTGGATCATCTGCTGGTGGCAAAAAGGCTTTCACTGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

159

Amino Acids

17.8

Weight (kDa)

10.54

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17_N	PF16205	4 - 72	3.3e-32	Ribosomal_S17 N-terminal
Ribosomal_S17	PF00366	74 - 142	5.6e-29	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	185
AclWI	GGATC	1 cut(s)	448
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	474
AcuI	CTGAAG	2 cut(s)	50, 443
AcvI	CACGTG	1 cut(s)	334
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	3 cut(s)	89, 153, 185
AflIII	ACRYGT	2 cut(s)	331, 333
AgsI	TTSAA	3 cut(s)	130, 152, 415
AjnI	CCWGG	2 cut(s)	82, 137
AluBI	AGCT	3 cut(s)	23, 54, 218
AluI	AGCT	3 cut(s)	23, 54, 218
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	2 cut(s)	73, 342
AlwI	GGATC	1 cut(s)	448
AoxI	GGCC	2 cut(s)	3, 389
ApeKI	GCWGC	2 cut(s)	34, 326
ApoI	RAATTY	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	56
BbrPI	CACGTG	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	46, 313
BciT130I	CCWGG	2 cut(s)	84, 139
BcoDI	GTCTC	2 cut(s)	73, 342
BfuAI	ACCTGC	1 cut(s)	282
BisI	GCNGC	2 cut(s)	35, 327
BlsI	GCNGC	2 cut(s)	36, 328
Bme1390I	CCNGG	2 cut(s)	84, 139
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	2 cut(s)	84, 139
BmsI	GCATC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	334
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	137, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 153, 185
Bse1I	ACTGG	3 cut(s)	110, 190, 475
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	84, 139
BseDI	CCNNGG	2 cut(s)	137, 138
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	3 cut(s)	89, 153, 185
BseMI	GCAATG	1 cut(s)	321
BseNI	ACTGG	3 cut(s)	110, 190, 475
BseXI	GCAGC	2 cut(s)	46, 313
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	2 cut(s)	312, 406
BshFI	GGCC	2 cut(s)	5, 391
BsiHKAI	GWGCWC	1 cut(s)	56
BslFI	GGGAC	2 cut(s)	169, 377
BslI	CCNNNNNNNGG	3 cut(s)	89, 153, 185
BsmAI	GTCTC	2 cut(s)	73, 342
BsmFI	GGGAC	2 cut(s)	169, 377
BsnI	GGCC	2 cut(s)	5, 391
Bso31I	GGTCTC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	440
BspANI	GGCC	2 cut(s)	5, 391
BspLI	GGNNCC	1 cut(s)	365
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	448
BspQI	GCTCTTC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	110, 190, 475
BssECI	CCNNGG	2 cut(s)	137, 138
BssMI	GATC	1 cut(s)	440
Bst2UI	CCWGG	2 cut(s)	84, 139
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	2 cut(s)	104, 302
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	3 cut(s)	214, 237, 405
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	2 cut(s)	73, 342
BstMBI	GATC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	2 cut(s)	84, 139
BstSCI	CCNGG	2 cut(s)	82, 137
BstV1I	GCAGC	2 cut(s)	46, 313
BsuRI	GGCC	2 cut(s)	5, 391
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	4 cut(s)	183, 238, 389, 468
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	364
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	2 cut(s)	342, 368
CviJI	RGCY	9 cut(s)	5, 23, 37, 54, 121, 126, 218, 391, 464
CviKI_1	RGCY	9 cut(s)	5, 23, 37, 54, 121, 126, 218, 391, 464
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	3 cut(s)	214, 237, 405
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	104, 302
EarI	CTCTTC	2 cut(s)	104, 302
Ecl136II	GAGCTC	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	50, 443
Eco72I	CACGTG	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	82, 137
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	2 cut(s)	345, 371
FaiI	YATR	4 cut(s)	282, 303, 343, 369
FaqI	GGGAC	2 cut(s)	169, 377
FatI	CATG	2 cut(s)	341, 367
Fnu4HI	GCNGC	2 cut(s)	35, 327
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	35, 327
GluI	GCNGC	2 cut(s)	35, 327
GsaI	CCCAGC	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	5, 391
HgaI	GACGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	345, 371
HinfI	GANTC	2 cut(s)	133, 430
HphI	GGTGA	1 cut(s)	439
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	49, 130
Hpy99I	CGWCG	2 cut(s)	119, 267
HpyAV	CCTTC	3 cut(s)	146, 353, 418
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	3 cut(s)	277, 329, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	3 cut(s)	214, 237, 405
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	345, 371
Kzo9I	GATC	1 cut(s)	440
LguI	GCTCTTC	1 cut(s)	104
Lsp1109I	GCAGC	2 cut(s)	46, 313
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	333
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	3 cut(s)	70, 121, 319
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	2 cut(s)	268, 474
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	3 cut(s)	86, 303, 402
MseI	TTAA	1 cut(s)	478
MspR9I	CCNGG	2 cut(s)	84, 139
MvaI	CCWGG	2 cut(s)	84, 139
MwoI	GCNNNNNNNGC	1 cut(s)	388
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	2 cut(s)	345, 371
NlaIV	GGNNCC	1 cut(s)	365
PasI	CCCWGGG	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	430
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	36, 328
PleI	GAGTC	1 cut(s)	127
PmaCI	CACGTG	1 cut(s)	334
PmlI	CACGTG	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	82, 137
PspCI	CACGTG	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	2 cut(s)	82, 137
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	364
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	478
SatI	GCNGC	2 cut(s)	35, 327
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	2 cut(s)	84, 139
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	8 cut(s)	25, 56, 85, 220, 276, 336, 413, 429
SfaNI	GCATC	1 cut(s)	133
SinI	GGWCC	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	2 cut(s)	268, 474
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	82, 137
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	56, 262
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	268, 474
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	478
Tru9I	TTAA	1 cut(s)	478
TscAI	CASTG	4 cut(s)	190, 238, 389, 475
TseI	GCWGC	2 cut(s)	34, 326
TspDTI	ATGAA	1 cut(s)	257
TspGWI	ACGGA	2 cut(s)	280, 338
TspRI	CASTG	4 cut(s)	190, 238, 389, 475
Van91I	CCANNNNNTGG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	364
XapI	RAATTY	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.