Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Reverse (-)

948769 .. 950406

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCCGAACAGACCGAGAAAGCTTTTCTGAAGCAGCCTAAGGTGTTCTTGAGCTCGAAGAAAACCGGAAAGGGAAAGAGACCTGGAAAAGGTGGCAACCGGTTCTGGAAGAGCGTCGGGCTCGGCTTCAAGACCCCGAGGGATGCCATCGAAGGGACATACATTGATAAGAAATGCCCATTCACTGGGAATGTCTCTATCAGGGGACGTATCTTAGCTGGTACTTGCCACAGCGCTAAGATGAACAAGACCATTATTGTTCGACGGAATTACCTGCATTATATCAAGAAGTATCAAAGATATGAGAAGAGGCACTCGAACATTGCTGCACACGTGTCTCCATGCTTCCGTGTGAAAGAAGGAGACCATGTTATCATCGGGCAGTGCAGGCCATTGTCCAAGACCAAGAGGTTCAATGTGCTGAAGGTGATTCCCGCTGGATCGTCGTCAGCTTTTGGAAAGAAGGCTTTCACTGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

161

Amino Acids

17.9

Weight (kDa)

10.54

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17_N	PF16205	4 - 72	5.8e-32	Ribosomal_S17 N-terminal
Ribosomal_S17	PF00366	74 - 142	5.7e-29	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	185
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	1 cut(s)	448
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	50, 443
AcvI	CACGTG	1 cut(s)	334
AfaI	GTAC	1 cut(s)	223
AfeI	AGCGCT	1 cut(s)	235
AfiI	CCNNNNNNNGG	3 cut(s)	89, 153, 185
AflIII	ACRYGT	2 cut(s)	331, 333
AgeI	ACCGGT	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	130, 415
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	4 cut(s)	23, 54, 218, 452
AluI	AGCT	4 cut(s)	23, 54, 218, 452
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	4 cut(s)	73, 199, 342, 357
AlwI	GGATC	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	136
Aor51HI	AGCGCT	1 cut(s)	235
AoxI	GGCC	2 cut(s)	3, 389
ApeKI	GCWGC	2 cut(s)	34, 326
AsiGI	ACCGGT	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	439
AvaI	CYCGRG	1 cut(s)	136
AxyI	CCTNAGG	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	56, 123
BbrPI	CACGTG	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	46, 313
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	4 cut(s)	73, 199, 342, 357
BfoI	RGCGCY	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	282
BisI	GCNGC	2 cut(s)	35, 327
BlsI	GCNGC	2 cut(s)	36, 328
Bme1390I	CCNGG	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	133
BmuI	ACTGGG	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	334
BsaI	GGTCTC	2 cut(s)	73, 357
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	2 cut(s)	65, 99
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 153, 185
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	2 cut(s)	190, 478
Bse21I	CCTNAGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	3 cut(s)	89, 153, 185
BseMI	GCAATG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	190, 478
BseXI	GCAGC	2 cut(s)	46, 313
BsgI	GTGCAG	2 cut(s)	312, 406
BshFI	GGCC	2 cut(s)	5, 391
BshTI	ACCGGT	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	66, 100
BslFI	GGGAC	2 cut(s)	169, 219
BslI	CCNNNNNNNGG	3 cut(s)	89, 153, 185
BsmAI	GTCTC	4 cut(s)	73, 199, 342, 357
BsmFI	GGGAC	2 cut(s)	169, 219
BsnI	GGCC	2 cut(s)	5, 391
Bso31I	GGTCTC	2 cut(s)	73, 357
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	56, 123
Bsp143I	GATC	1 cut(s)	440
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	2 cut(s)	5, 391
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	448
BspQI	GCTCTTC	1 cut(s)	104
BspTNI	GGTCTC	2 cut(s)	73, 357
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	190, 478
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	84
Bst6I	CTCTTC	2 cut(s)	104, 302
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	3 cut(s)	39, 214, 237
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	148
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	4 cut(s)	73, 199, 342, 357
BstMBI	GATC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	46, 313
Bsu36I	CCTNAGG	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	5, 391
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	3 cut(s)	183, 389, 471
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	389
CfoI	GCGC	1 cut(s)	236
Cfr10I	RCCGGY	1 cut(s)	99
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	222
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	2 cut(s)	342, 368
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	3 cut(s)	39, 214, 237
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	104, 302
EarI	CTCTTC	2 cut(s)	104, 302
Ecl136II	GAGCTC	1 cut(s)	54
Eco24I	GRGCYC	2 cut(s)	56, 123
Eco31I	GGTCTC	2 cut(s)	73, 357
Eco47III	AGCGCT	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	50, 443
Eco72I	CACGTG	1 cut(s)	334
Eco81I	CCTNAGG	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	54
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	82
EcoT38I	GRGCYC	2 cut(s)	56, 123
FaeI	CATG	2 cut(s)	345, 371
FaiI	YATR	5 cut(s)	160, 282, 303, 343, 369
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	2 cut(s)	169, 219
FatI	CATG	2 cut(s)	341, 367
FauI	CCCGC	1 cut(s)	442
Fnu4HI	GCNGC	2 cut(s)	35, 327
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	2 cut(s)	56, 123
Fsp4HI	GCNGC	2 cut(s)	35, 327
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	2 cut(s)	35, 327
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	5, 391
HapII	CCGG	2 cut(s)	66, 100
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	2 cut(s)	345, 371
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	66, 100
HphI	GGTGA	1 cut(s)	439
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	4 cut(s)	49, 106, 130, 286
Hpy99I	CGWCG	3 cut(s)	119, 267, 448
HpyAV	CCTTC	4 cut(s)	146, 353, 418, 457
HpyCH4IV	ACGT	2 cut(s)	208, 333
HpyCH4V	TGCA	3 cut(s)	277, 329, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	3 cut(s)	39, 214, 237
HpySE526I	ACGT	2 cut(s)	208, 333
Hsp92II	CATG	2 cut(s)	345, 371
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	440
LguI	GCTCTTC	1 cut(s)	104
Lsp1109I	GCAGC	2 cut(s)	46, 313
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	2 cut(s)	208, 333
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	3 cut(s)	70, 121, 319
MhlI	GDGCHC	2 cut(s)	56, 123
MluCI	AATT	1 cut(s)	268
MnlI	CCTC	3 cut(s)	132, 303, 402
MroXI	GAANNNNTTC	1 cut(s)	467
MseI	TTAA	1 cut(s)	481
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	2 cut(s)	66, 100
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	388
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	2 cut(s)	345, 371
NmeAIII	GCCGAG	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	430
PflMI	CCANNNNNTGG	1 cut(s)	185
PinAI	ACCGGT	1 cut(s)	99
PkrI	GCNGC	2 cut(s)	36, 328
PmaCI	CACGTG	1 cut(s)	334
PmlI	CACGTG	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	82
PspCI	CACGTG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	481
SatI	GCNGC	2 cut(s)	35, 327
Sau3AI	GATC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	56, 123
SfaNI	GCATC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	1 cut(s)	435
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	82
TaiI	ACGT	2 cut(s)	211, 336
TaqI	TCGA	4 cut(s)	56, 150, 262, 317
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	481
Tru9I	TTAA	1 cut(s)	481
TscAI	CASTG	3 cut(s)	190, 389, 478
TseI	GCWGC	2 cut(s)	34, 326
TspDTI	ATGAA	1 cut(s)	257
TspGWI	ACGGA	2 cut(s)	280, 338
TspRI	CASTG	3 cut(s)	190, 389, 478
Van91I	CCANNNNNTGG	1 cut(s)	185
XagI	CCTNNNNNAGG	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.