Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Forward (+)

28829275 .. 28830141

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023829

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGATCTCCTGTCTCACCCTAATGGGGTTGAAGCTATATGCATTGAGTTTTGGAACACTTGCAGCTGATATGGCCCTTTTTAGCGGTTTCTCTTCTGATAATGATGGATACGATCTAGATTATCATATTCAAGGTTTCTCTTCCATTGCAGAAGCCATAGAAGATATTCATCAAGGCAAGATGATGAAGATAGAGAAAACGAGGGAGTCTTATAATGGCAGCATCCTTGGCAACACGAGAAGCTATGGCTTTTATTGTCAAGCACGGAATTGGAATTGTTACTGTGAGCGTGAAAGGAGAAGACTAGGAAAGGTTGCAACTTTCGTTGATGGTGACACAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0008686 GO:0009058 GO:0009110 GO:0009231 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016830 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko00790 ko01100 ko01110 map00740 map00790 map01100 map01110

Pfam Domains

Protein Families

DHBP_synthase GTP_cyclohydro2

Protein Analysis

115

Amino Acids

12.88

Weight (kDa)

5.34

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AciI	CCGC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	31, 131
AluBI	AGCT	3 cut(s)	34, 65, 243
AluI	AGCT	3 cut(s)	34, 65, 243
Alw26I	GTCTC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	62, 219
Asp700I	GAANNNNTTC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	7, 344
BauI	CACGAG	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	74, 231
BccI	CCATC	2 cut(s)	98, 323
BciVI	GTATCC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	116, 305
BfuI	GTATCC	1 cut(s)	101
BisI	GCNGC	2 cut(s)	63, 220
BlsI	GCNGC	2 cut(s)	64, 221
BmgT120I	GGNCC	1 cut(s)	73
BmsI	GCATC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	74, 231
BshFI	GGCC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	3, 112
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	2 cut(s)	3, 112
BssSI	CACGAG	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	226
Bst2BI	CACGAG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	97, 145
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	6, 115
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	3, 112
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 228
BstV1I	GCAGC	2 cut(s)	74, 231
BstV2I	GAAGAC	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	73
CviJI	RGCY	6 cut(s)	34, 65, 74, 155, 243, 249
CviKI_1	RGCY	6 cut(s)	34, 65, 74, 155, 243, 249
DpnI	GATC	2 cut(s)	5, 114
DpnII	GATC	2 cut(s)	3, 112
Eam1104I	CTCTTC	2 cut(s)	97, 145
EarI	CTCTTC	2 cut(s)	97, 145
Eco130I	CCWWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	226
FaiI	YATR	7 cut(s)	37, 39, 71, 126, 158, 213, 246
Fnu4HI	GCNGC	2 cut(s)	63, 220
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	63, 220
FspBI	CTAG	2 cut(s)	116, 305
GluI	GCNGC	2 cut(s)	63, 220
HaeIII	GGCC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	206
HphI	GGTGA	2 cut(s)	7, 344
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	4 cut(s)	41, 62, 149, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 228
Kzo9I	GATC	2 cut(s)	3, 112
LpnPI	CCDG	1 cut(s)	22
Lsp1109I	GCAGC	2 cut(s)	74, 231
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	116, 305
MaeIII	GTNAC	2 cut(s)	278, 332
MalI	GATC	2 cut(s)	5, 114
MboI	GATC	2 cut(s)	3, 112
MboII	GAAGA	5 cut(s)	84, 132, 173, 199, 312
MluCI	AATT	2 cut(s)	268, 274
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	43
MroXI	GAANNNNTTC	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	71, 228
NdeII	GATC	2 cut(s)	3, 112
NmuCI	GTSAC	1 cut(s)	332
NsiI	ATGCAT	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	64, 221
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	2 cut(s)	63, 220
Sau3AI	GATC	2 cut(s)	3, 112
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	215
SetI	ASST	5 cut(s)	36, 67, 136, 245, 315
SfaNI	GCATC	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	2 cut(s)	268, 274
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	2 cut(s)	116, 305
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	284
TasI	AATT	2 cut(s)	268, 274
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	2 cut(s)	62, 219
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	2 cut(s)	158, 200
TspGWI	ACGGA	1 cut(s)	280
XbaI	TCTAGA	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	2 cut(s)	116, 305
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.