Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Forward (+)

40420870 .. 40423421

Gene Structure 2552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G485300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGGAACAGACCGAGAAGGCTTTCTTGAAGCAACCCAAGGTTTTCCTGAGCTCAAAGAAGACAGGGAAAGGAAAGAGGCCAGGAAAAGGAGGCAATCGGTTCTGGAAGAGTGTTGGGTTGGGGTTCAAGACACCCAGAGACGCTATTGAAGGAACTTATATTGATAAGAAATGCCCCTTCACCGGCAATGTCTCCATCCGGGGTCGCGTTCTCTCTGGTACTTGCCACAGTGCCAAGATGTCGAGGACTATAATTGTTCGACGTAATTATCTTCATTATATTAAGAAATACCAAAGATATGAGAAGAGGCATTCCAACATTCCTGCTCATGTGTCACCATGCTTCCGTGTGAAGGAGGGAGATTATGTCATCATTGGCCAATGCAGGCCATTGTCAAAGACAGTGAGGTTTAACGTGTTGAAGGTGACTCCGGCTGGTTCTTCTGGAGCTGGAAAGAAGGCATTCACTGGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

160

Amino Acids

17.77

Weight (kDa)

10.52

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	210
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	379
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	3 cut(s)	89, 185, 355
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	4 cut(s)	31, 130, 152, 424
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	54, 452
AluI	AGCT	2 cut(s)	54, 452
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	2 cut(s)	135, 199
AoxI	GGCC	3 cut(s)	80, 379, 389
Asp700I	GAANNNNTTC	2 cut(s)	23, 464
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	3 cut(s)	175, 330, 439
BalI	TGGCCA	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	2 cut(s)	135, 199
Bme1390I	CCNGG	2 cut(s)	84, 203
BmrFI	CCNGG	2 cut(s)	84, 203
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	39, 202
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 185, 355
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	39, 202
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	3 cut(s)	89, 185, 355
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	82, 381, 391
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	3 cut(s)	186, 202, 434
BslI	CCNNNNNNNGG	3 cut(s)	89, 185, 355
BsmAI	GTCTC	2 cut(s)	135, 199
BsmBI	CGTCTC	1 cut(s)	135
BsmI	GAATGC	2 cut(s)	313, 464
BsnI	GGCC	3 cut(s)	82, 381, 391
Bsp1286I	GDGCHC	1 cut(s)	56
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	82, 381, 391
BspCNI	CTCAG	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	39, 202
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	233, 406
Bst6I	CTCTTC	2 cut(s)	104, 302
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	210
BstMAI	GTCTC	2 cut(s)	135, 199
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	82, 201
BstUI	CGCG	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	68
BsuRI	GGCC	3 cut(s)	82, 381, 391
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	3 cut(s)	238, 411, 468
Cac8I	GCNNGC	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	185
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	2 cut(s)	332, 342
CviJI	RGCY	7 cut(s)	23, 54, 82, 381, 391, 437, 452
CviKI_1	RGCY	7 cut(s)	23, 54, 82, 381, 391, 437, 452
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	104, 302
EarI	CTCTTC	2 cut(s)	104, 302
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	2 cut(s)	335, 345
FaiI	YATR	8 cut(s)	162, 254, 282, 303, 333, 343, 369, 478
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	2 cut(s)	331, 341
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	82, 381, 391
HapII	CCGG	3 cut(s)	186, 202, 434
HgaI	GACGC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	335, 345
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	3 cut(s)	186, 202, 434
HphI	GGTGA	3 cut(s)	175, 330, 439
Hpy188III	TCNNGA	5 cut(s)	28, 49, 106, 130, 447
Hpy99I	CGWCG	1 cut(s)	267
HpyAV	CCTTC	6 cut(s)	13, 146, 190, 349, 418, 454
HpyCH4III	ACNGT	2 cut(s)	233, 406
HpyCH4IV	ACGT	2 cut(s)	265, 417
HpyCH4V	TGCA	1 cut(s)	387
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	2 cut(s)	265, 417
Hsp92II	CATG	2 cut(s)	335, 345
LmnI	GCTCC	1 cut(s)	449
MaeII	ACGT	2 cut(s)	265, 417
MaeIII	GTNAC	2 cut(s)	336, 427
MboII	GAAGA	5 cut(s)	73, 121, 266, 319, 435
MhlI	GDGCHC	1 cut(s)	56
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	2 cut(s)	255, 268
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	6 cut(s)	72, 86, 240, 303, 352, 402
Mox20I	TGGCCA	1 cut(s)	381
MroXI	GAANNNNTTC	2 cut(s)	23, 464
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	2 cut(s)	285, 414
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	3 cut(s)	186, 202, 434
MspR9I	CCNGG	2 cut(s)	84, 203
Mva1269I	GAATGC	2 cut(s)	313, 464
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	210
NciI	CCSGG	1 cut(s)	203
NlaIII	CATG	2 cut(s)	335, 345
NmuCI	GTSAC	2 cut(s)	336, 427
PctI	GAATGC	2 cut(s)	313, 464
PdmI	GAANNNNTTC	2 cut(s)	23, 464
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	285, 414
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	2 cut(s)	84, 203
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	7 cut(s)	45, 56, 268, 413, 420, 429, 454
Sse9I	AATT	2 cut(s)	255, 268
SsiI	CCGC	1 cut(s)	5
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	82, 201
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	233, 406
TaiI	ACGT	2 cut(s)	268, 420
TaqI	TCGA	2 cut(s)	245, 262
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	255, 268
Tru1I	TTAA	2 cut(s)	285, 414
Tru9I	TTAA	2 cut(s)	285, 414
TscAI	CASTG	3 cut(s)	238, 411, 475
TseFI	GTSAC	2 cut(s)	336, 427
Tsp45I	GTSAC	2 cut(s)	336, 427
TspDTI	ATGAA	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	238, 411, 475
XmnI	GAANNNNTTC	2 cut(s)	23, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.