AT4G30800

Belongs to the universal ribosomal protein uS17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
15000960 .. 15002671
1712 bp
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UTR
Exon/CDS
Intron
AT4G30800.1

Sequence Viewer

Length: 480 bp
ATGGCAGAGCAGACGGAGAAGGCGTTTCTTAAGCAACCAAAAGTTTTCTTAAGCTCGAAGAAATCTGGTAAGGGAAAGAGGCCTGGTAAAGGAGGTAATCGTTTCTGGAAGAACATTGGCCTTGGTTTCAAAACTCCAAGAGAGGCTATTGAAGGAACATACATTGACCAGAAATGTCCCTTTACTGGTACGGTTTCAATCAGGGGTCGCATCTTGTCTGGAACTTGTCACAGTGCAAAGATGCAGAGGACGATCATTGTTCGTAGGGACTATCTTCATTTTGTGAAGAAGTATCGAAGATATGAGAAAAGACACTCAAACATTCCTGCTCATGTTTCCCCGTGCTTCCGTGTCAAAGAAGGAGATCGTGTTACCATTGGGCAATGCAGGCCATTGTCAAAGACGGTGAGGTTCAATGTCCTGAAGGTCATTCCGGCTGGAAGCTCTTCTATCGGGAAAAAAGCATTCACTGGAATGTAA

Protein Analysis

159

Amino Acids

17.93

Weight (kDa)

10.74

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17_N PF16205 4 - 72 3.6e-31 Ribosomal_S17 N-terminal
Ribosomal_S17 PF00366 74 - 142 7.1e-28 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 443
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 2 cut(s) 89, 185
AflII CTTAAG 2 cut(s) 29, 49
AgsI TTSAA 4 cut(s) 130, 152, 198, 415
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 2 cut(s) 54, 444
AluI AGCT 2 cut(s) 54, 444
AoxI GGCC 3 cut(s) 80, 118, 389
Asp700I GAANNNNTTC 1 cut(s) 445
AsuHPI GGTGA 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 84
BfrI CTTAAG 2 cut(s) 29, 49
Bme1390I CCNGG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 2 cut(s) 219, 231
BsaJI CCNNGG 1 cut(s) 121
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 354, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 185
Bse1I ACTGG 2 cut(s) 190, 475
Bse3DI GCAATG 1 cut(s) 389
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 121
BseLI CCNNNNNNNGG 2 cut(s) 89, 185
BseMI GCAATG 1 cut(s) 389
BseNI ACTGG 2 cut(s) 190, 475
BshFI GGCC 3 cut(s) 82, 120, 391
BsiSI CCGG 1 cut(s) 434
BslFI GGGAC 2 cut(s) 162, 281
BslI CCNNNNNNNGG 2 cut(s) 89, 185
BsmFI GGGAC 2 cut(s) 162, 281
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 3 cut(s) 82, 120, 391
Bsp143I GATC 2 cut(s) 252, 364
BspANI GGCC 3 cut(s) 82, 120, 391
BspQI GCTCTTC 1 cut(s) 451
BspTI CTTAAG 2 cut(s) 29, 49
BsrDI GCAATG 1 cut(s) 389
BsrI ACTGG 2 cut(s) 190, 475
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 2 cut(s) 252, 364
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 3 cut(s) 193, 233, 406
Bst6I CTCTTC 1 cut(s) 451
BstAFI CTTAAG 2 cut(s) 29, 49
BstC8I GCNNGC 1 cut(s) 389
BstENI CCTNNNNNAGG 1 cut(s) 87
BstKTI GATC 2 cut(s) 255, 367
BstMBI GATC 2 cut(s) 252, 364
BstMWI GCNNNNNNNGC 1 cut(s) 388
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BsuRI GGCC 3 cut(s) 82, 120, 391
BtsIMutI CAGTG 2 cut(s) 238, 468
Cac8I GCNNGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 189
CviAII CATG 1 cut(s) 332
CviJI RGCY 7 cut(s) 54, 82, 120, 146, 391, 437, 444
CviKI_1 RGCY 7 cut(s) 54, 82, 120, 146, 391, 437, 444
CviQI GTAC 1 cut(s) 189
DpnI GATC 2 cut(s) 254, 366
DpnII GATC 2 cut(s) 252, 364
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 121
Eco147I AGGCCT 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 443
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 1 cut(s) 335
FaiI YATR 3 cut(s) 160, 303, 333
FaqI GGGAC 2 cut(s) 162, 281
FatI CATG 1 cut(s) 331
HaeIII GGCC 3 cut(s) 82, 120, 391
HapII CCGG 1 cut(s) 434
Hin1II CATG 1 cut(s) 335
HpaII CCGG 1 cut(s) 434
HphI GGTGA 1 cut(s) 418
Hpy188III TCNNGA 4 cut(s) 106, 219, 421, 454
HpyAV CCTTC 4 cut(s) 13, 146, 353, 418
HpyCH4III ACNGT 3 cut(s) 193, 233, 406
HpyCH4V TGCA 3 cut(s) 236, 244, 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 388
Hsp92II CATG 1 cut(s) 335
Kzo9I GATC 2 cut(s) 252, 364
LguI GCTCTTC 1 cut(s) 451
LweI GCATC 2 cut(s) 219, 231
MaeIII GTNAC 2 cut(s) 227, 370
MalI GATC 2 cut(s) 254, 366
MboI GATC 2 cut(s) 252, 364
MboII GAAGA 6 cut(s) 70, 121, 266, 298, 309, 438
MnlI CCTC 5 cut(s) 72, 86, 136, 240, 402
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 2 cut(s) 30, 50
MslI CAYNNNNRTG 1 cut(s) 473
MspCI CTTAAG 2 cut(s) 29, 49
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 464
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 388
NdeII GATC 2 cut(s) 252, 364
NlaIII CATG 1 cut(s) 335
NmuCI GTSAC 1 cut(s) 227
PceI AGGCCT 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 464
PdmI GAANNNNTTC 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 473
SapI GCTCTTC 1 cut(s) 451
SaqAI TTAA 2 cut(s) 30, 50
Sau3AI GATC 2 cut(s) 252, 364
ScrFI CCNGG 1 cut(s) 84
SetI ASST 5 cut(s) 56, 97, 413, 429, 446
SfaNI GCATC 2 cut(s) 219, 231
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 2 cut(s) 29, 49
SmoI CTYRAG 2 cut(s) 29, 49
SseBI AGGCCT 1 cut(s) 82
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 3 cut(s) 193, 233, 406
TaqI TCGA 2 cut(s) 56, 295
Tru1I TTAA 2 cut(s) 30, 50
Tru9I TTAA 2 cut(s) 30, 50
TscAI CASTG 2 cut(s) 238, 475
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 266
TspGWI ACGGA 2 cut(s) 29, 338
TspRI CASTG 2 cut(s) 238, 475
Vha464I CTTAAG 2 cut(s) 29, 49
XagI CCTNNNNNAGG 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.