Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Forward (+)

9398683 .. 9400650

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1129800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGGAACAGACCGAGAAGGCTTTCTTGAAGCAGCCCAAGGTTTTCCTCAGCTCAAAGAAGACAGGGAAGGGAAAGAGGCCTGGAAAGGGAGGCAATCGCTTCTGGAAGAGTGTTGGGTTGGGATTCAAGACCCCCCGAGATGCTATAGAAGGAACATACATTGACAAGAAGTGCCCTTTCACTGGCAACGTCTCCATCAGGGGTCGTATTCTCTCTGGTACTTGCCACAGTGCCAAGATGTCGAGGACCATTATTGTTCGCCGCAACTACCTTCATTATATTAAAAAATACCAGAGATACGAGAAAAGGCACTCAAACATTCCGGCTCACGTTTCACCTTGCTTCCGTGTGAAAGAGGGAGATTATGTCATTATTGGCCAGTGCAGGCCATTGTCAAAGACAGTGAGGTTTAATGTGTTGAAGGTGACTCCAGCCGGTTCATCTGGAACTGGGAAGAAGGCATTCACTGGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17 Ribosomal_S17_N

Protein Analysis

160

Amino Acids

17.81

Weight (kDa)

10.52

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17_N	PF16205	4 - 72	5.7e-32	Ribosomal_S17 N-terminal
Ribosomal_S17	PF00366	74 - 142	1.2e-27	Ribosomal protein S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 265
AcoI	YGGCCR	1 cut(s)	379
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	89, 185
AgsI	TTSAA	3 cut(s)	31, 130, 424
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	3 cut(s)	80, 379, 389
ApeKI	GCWGC	1 cut(s)	34
Asp700I	GAANNNNTTC	2 cut(s)	23, 464
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	330, 439
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	199
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	2 cut(s)	35, 265
BlsI	GCNGC	2 cut(s)	36, 266
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	249
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	1 cut(s)	133
BmuI	ACTGGG	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 185
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	4 cut(s)	190, 382, 457, 475
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	39
BseLI	CCNNNNNNNGG	2 cut(s)	89, 185
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	4 cut(s)	190, 382, 457, 475
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	46
BsgI	GTGCAG	1 cut(s)	406
BshFI	GGCC	3 cut(s)	82, 381, 391
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	326, 438
BslI	CCNNNNNNNGG	2 cut(s)	89, 185
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	3 cut(s)	82, 381, 391
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	179
BspACI	CCGC	2 cut(s)	5, 265
BspANI	GGCC	3 cut(s)	82, 381, 391
BspCNI	CTCAG	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	4 cut(s)	190, 382, 457, 475
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	233, 406
Bst6I	CTCTTC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	1 cut(s)	50
BstMAI	GTCTC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	68
BsuRI	GGCC	3 cut(s)	82, 381, 391
BtsIMutI	CAGTG	5 cut(s)	183, 238, 389, 411, 468
Cac8I	GCNNGC	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	222
CviJI	RGCY	8 cut(s)	23, 37, 54, 82, 329, 381, 391, 437
CviKI_1	RGCY	8 cut(s)	23, 37, 54, 82, 329, 381, 391, 437
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	199
FaiI	YATR	5 cut(s)	149, 160, 282, 369, 478
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
Fnu4HI	GCNGC	2 cut(s)	35, 265
Fsp4HI	GCNGC	2 cut(s)	35, 265
GluI	GCNGC	2 cut(s)	35, 265
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	3 cut(s)	82, 381, 391
HapII	CCGG	2 cut(s)	326, 438
HinfI	GANTC	2 cut(s)	126, 430
HpaII	CCGG	2 cut(s)	326, 438
HphI	GGTGA	2 cut(s)	330, 439
Hpy188III	TCNNGA	4 cut(s)	28, 106, 130, 447
HpyAV	CCTTC	6 cut(s)	13, 64, 146, 284, 418, 454
HpyCH4III	ACNGT	2 cut(s)	233, 406
HpyCH4IV	ACGT	2 cut(s)	192, 333
HpyCH4V	TGCA	1 cut(s)	387
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	2 cut(s)	192, 333
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	2 cut(s)	192, 333
MaeIII	GTNAC	1 cut(s)	427
MboII	GAAGA	3 cut(s)	73, 121, 469
MhlI	GDGCHC	1 cut(s)	179
MlsI	TGGCCA	1 cut(s)	381
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	6 cut(s)	59, 72, 86, 240, 352, 402
Mox20I	TGGCCA	1 cut(s)	381
MroXI	GAANNNNTTC	2 cut(s)	23, 464
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	2 cut(s)	285, 414
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	2 cut(s)	326, 438
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	82
PctI	GAATGC	1 cut(s)	464
PdmI	GAANNNNTTC	2 cut(s)	23, 464
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	36, 266
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	249
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	285, 414
SatI	GCNGC	2 cut(s)	35, 265
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	8 cut(s)	45, 56, 195, 276, 336, 343, 413, 429
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	249
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	2 cut(s)	5, 265
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	233, 406
TaiI	ACGT	2 cut(s)	195, 336
TaqI	TCGA	1 cut(s)	245
TaqII	GACCGA	1 cut(s)	29
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	285, 414
Tru9I	TTAA	2 cut(s)	285, 414
TscAI	CASTG	5 cut(s)	190, 238, 389, 411, 475
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	266, 432
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	5 cut(s)	190, 238, 389, 411, 475
VpaK11BI	GGWCC	1 cut(s)	249
XmnI	GAANNNNTTC	2 cut(s)	23, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.