Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001732

Physical Location & Seq

Genomic Coordinates Reverse (-)

44552969 .. 44554081

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45760

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCCCCTCTTAGTACCGGTTTCTCTCCTGATAATGATAGATATGATCTAGATTATCCTATTCAAGGATTTTCTTCTATTGCGGAAGCCATTGAAGATATTCATCAAGGCAAGGTATTGTTCTCTTTGTGGTGCATAGTTTTCACAAAGTTTTCTGCAAAAACTCTCTCTGATTGTTATCCATTTTCCATGCCTACTATGTCATTTGCATACATCAGTCTTGAGATCAGTGAGTCATTGATACGAAGGAAGATTGGAAGATCGGCTCATCTTGGCTGTGATACTTGGTTGATAAAAGTTAAATCAATTATAAATCAAGTTAACTGTGTTGCTAGTGAATGTGATTGTGTTAAACATCACTACTTGTATACTGTAAACTTATTGATTCATAGTGGATTTATTTCTCGTGTTGGCTACGTTAAAAGCCACAAAGTGAGGTTTCCTCAGTGGAGAGGTTTACAATGTGTTAACAAGTGCTGTGTTATCTTTGTGTGTGATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006767 GO:0006771 GO:0006807 GO:0008150 GO:0008152 GO:0008686 GO:0009058 GO:0009110 GO:0009231 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016830 GO:0017144 GO:0018130 GO:0034641 GO:0042364 GO:0042726 GO:0042727 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00740 ko00790 ko01100 ko01110 map00740 map00790 map01100 map01110

Pfam Domains

Protein Families

DHBP_synthase GTP_cyclohydro2

Protein Analysis

167

Amino Acids

18.97

Weight (kDa)

8.32

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48930 AT4G30800 AT5G23740
fragaria_vesca	FvH4_1g01810 FvH4_1g30360 FvH4_2g28364
malus_domestica	MD02G1001600.v1.1 MD02G1001700.v1.1 MD02G1014400.v1.1 MD02G1015400.v1.1 MD02G1015900.v1.1 MD02G1016000.v1.1 MD08G1153000.v1.1 MD15G1129800.v1.1 MD15G1160700.v1.1
prunus_persica	Prupe.1G485300_v2.0.a1 Prupe.7G255900_v2.0.a1
pyrus_communis	pycom02g01400 pycom08g13200 pycom15g11700 pycom15g27160
rosa_chinensis	RchiOBHm_Chr2g0086791 RchiOBHm_Chr3g0490411 RchiOBHm_Chr3g0495131 RchiOBHm_Chr6g0297321
rosa_laevigata	RLG00000011611 RLG00000015793 RLG00000022890 RLG00000023829
rosa_multiflora	Rmu_co8399123.1_g000001 Rmu_sc0002489.1_g000038 Rmu_sc0004535.1_g000009 Rmu_sc0005498.1_g000009 Rmu_sc0007033.1_g000019 Rmu_sc0026458.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152630 Rroxscaffold_2G00154180 Rroxscaffold_6G00393440 Rroxscaffold_7G00170650
rosa_rugosa	Rorug01G0469300 Rorug03G0243700 Rorug06G0270700
rosa_samantha	Rh2BG022200 Rh3AG292700 Rh3BG329500
rosa_wichuraiana	Rw2G001760 Rw3G025920 Rw6G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	368
AciI	CCGC	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgeI	ACCGGT	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	65, 95
AoxI	GGCC	1 cut(s)	3
AsiGI	ACCGGT	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	405
BfaI	CTAG	2 cut(s)	50, 333
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BpuEI	CTTGAG	1 cut(s)	242
BsaBI	GATNNNNATC	2 cut(s)	102, 177
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	17
Bse8I	GATNNNNATC	2 cut(s)	102, 177
BseJI	GATNNNNATC	2 cut(s)	102, 177
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	458
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	65
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	46, 225, 260
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssMI	GATC	3 cut(s)	46, 225, 260
BssNAI	GTATAC	1 cut(s)	369
BssSI	CACGAG	1 cut(s)	405
Bst1107I	GTATAC	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	326, 373
BstDEI	CTNAG	2 cut(s)	11, 444
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstKTI	GATC	3 cut(s)	49, 228, 263
BstMBI	GATC	3 cut(s)	46, 225, 260
BstZ17I	GTATAC	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	235, 452
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	15
CspAI	ACCGGT	1 cut(s)	17
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	5, 89, 266, 276, 414, 426
CviKI_1	RGCY	6 cut(s)	5, 89, 266, 276, 414, 426
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	2 cut(s)	11, 444
DpnI	GATC	3 cut(s)	48, 227, 262
DpnII	GATC	3 cut(s)	46, 225, 260
DraIII	CACNNNGTG	1 cut(s)	433
EcoNI	CCTNNNNNAGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	193
FaiI	YATR	8 cut(s)	45, 137, 191, 200, 211, 311, 369, 390
FatI	CATG	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	368
FspBI	CTAG	2 cut(s)	50, 333
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	1 cut(s)	193
HincII	GTYRAC	2 cut(s)	322, 469
HindII	GTYRAC	2 cut(s)	322, 469
HinfI	GANTC	2 cut(s)	233, 385
HpaI	GTTAAC	2 cut(s)	322, 469
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	5 cut(s)	322, 369, 376, 458, 469
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	3 cut(s)	29, 50, 221
Hpy8I	GTNNAC	5 cut(s)	322, 369, 376, 458, 469
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	2 cut(s)	326, 373
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	3 cut(s)	135, 158, 209
HpyF3I	CTNAG	2 cut(s)	11, 444
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	1 cut(s)	193
KspAI	GTTAAC	2 cut(s)	322, 469
Kzo9I	GATC	3 cut(s)	46, 225, 260
LpnPI	CCDG	2 cut(s)	31, 42
MaeI	CTAG	2 cut(s)	50, 333
MaeII	ACGT	1 cut(s)	417
MalI	GATC	3 cut(s)	48, 227, 262
MboI	GATC	3 cut(s)	46, 225, 260
MboII	GAAGA	4 cut(s)	66, 107, 262, 270
MluCI	AATT	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	4 cut(s)	18, 429, 446, 453
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	6 cut(s)	300, 321, 351, 420, 468, 502
MspI	CCGG	1 cut(s)	18
NdeII	GATC	3 cut(s)	46, 225, 260
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	385
PinAI	ACCGGT	1 cut(s)	17
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SaqAI	TTAA	6 cut(s)	300, 321, 351, 420, 468, 502
Sau3AI	GATC	3 cut(s)	46, 225, 260
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	242
SetI	ASST	4 cut(s)	117, 420, 440, 457
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	50, 333
TaaI	ACNGT	2 cut(s)	326, 373
TaiI	ACGT	1 cut(s)	420
TasI	AATT	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	6 cut(s)	300, 321, 351, 420, 468, 502
Tru9I	TTAA	6 cut(s)	300, 321, 351, 420, 468, 502
TscAI	CASTG	2 cut(s)	235, 452
TspDTI	ATGAA	2 cut(s)	92, 377
TspRI	CASTG	2 cut(s)	235, 452
XagI	CCTNNNNNAGG	1 cut(s)	63
XbaI	TCTAGA	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	2 cut(s)	50, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.