Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Reverse (-)

18166708 .. 18168700

Gene Structure 1993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49010.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTCAGACTCTTAAGTACAACATGAAGGTCAGAACCGGTAAAGGATTCACTCTTGAAGAGCTCAAGGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACCATCGTCGCAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGAGGCTGAAAACCTACAAGACCAAGTTAGTCATTTTCCCGCGTCGTGCCCGCAAGGTCAAGGCTGGTGACTCTACACCAGAAGAGTTGGCTAATGCTACCCAAGTTCAAGGAGACTACTTGCCTATTGTACGTGAGAAGCCTACCATGGAACTCGTCAAGCTGACTTCAGAAATGAAGTCTTTCAAGGCTTTTGACAAGATACGCCTTGAGCGCACTAACAAGAGGCATGCCGGAGCTAGAGCCAAGAGAGCCGCAGAGGCTGAGAAAGAAGAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

206

Amino Acids

23.77

Weight (kDa)

11.02

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13e	PF01294	6 - 81	4.4e-36	Ribosomal protein L13e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccII	CGCG	1 cut(s)	379
AciI	CCGC	4 cut(s)	160, 377, 388, 591
AcuI	CTGAAG	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	2 cut(s)	191, 468
AfiI	CCNNNNNNNGG	3 cut(s)	149, 275, 313
AflII	CTTAAG	1 cut(s)	185
AgeI	ACCGGT	1 cut(s)	209
AgsI	TTSAA	6 cut(s)	37, 73, 230, 326, 446, 523
AjnI	CCWGG	1 cut(s)	83
AjuI	GAANNNNNNNTTGG	4 cut(s)	17, 49, 296, 328
AluBI	AGCT	3 cut(s)	235, 499, 575
AluI	AGCT	3 cut(s)	235, 499, 575
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	444
AlwNI	CAGNNNCTG	2 cut(s)	343, 599
ApeKI	GCWGC	1 cut(s)	242
AsiGI	ACCGGT	1 cut(s)	209
Asp700I	GAANNNNTTC	2 cut(s)	131, 518
AspLEI	GCGC	2 cut(s)	268, 552
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	85
BciVI	GTATCC	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	1 cut(s)	576
BfoI	RGCGCY	1 cut(s)	269
BfrI	CTTAAG	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	260
BglI	GCCNNNNNGGC	1 cut(s)	596
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	2 cut(s)	243, 591
BlsI	GCNGC	2 cut(s)	244, 592
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	85
BoxI	GACNNNNGTC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	314
BpuEI	CTTGAG	2 cut(s)	221, 566
BsaAI	YACGTR	1 cut(s)	470
BsaHI	GRCGYC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	483
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 275, 313
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	483
BseLI	CCNNNNNNNGG	3 cut(s)	149, 275, 313
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	379
BshNI	GGYRCC	1 cut(s)	265
BshTI	ACCGGT	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	210, 570
BslI	CCNNNNNNNGG	3 cut(s)	149, 275, 313
BsmAI	GTCTC	1 cut(s)	444
Bsp1286I	GDGCHC	2 cut(s)	237, 388
Bsp143I	GATC	2 cut(s)	129, 308
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	4 cut(s)	160, 377, 388, 591
BspCNI	CTCAG	1 cut(s)	592
BspFNI	CGCG	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	2 cut(s)	129, 308
BssNI	GRCGYC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	85
Bst6I	CTCTTC	3 cut(s)	225, 414, 603
BstACI	GRCGYC	1 cut(s)	266
BstAFI	CTTAAG	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	3 cut(s)	81, 388, 567
BstDEI	CTNAG	1 cut(s)	600
BstDSI	CCRYGG	1 cut(s)	483
BstFNI	CGCG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	268, 552
BstKTI	GATC	2 cut(s)	132, 311
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	2 cut(s)	129, 308
BstMWI	GCNNNNNNNGC	3 cut(s)	549, 587, 596
BstNI	CCWGG	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	569
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	483
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	81, 388, 567
CaiI	CAGNNNCTG	2 cut(s)	343, 599
CfoI	GCGC	2 cut(s)	268, 552
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	152
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	190, 467
CspAI	ACCGGT	1 cut(s)	209
CviAII	CATG	5 cut(s)	66, 173, 196, 484, 566
CviQI	GTAC	2 cut(s)	190, 467
DdeI	CTNAG	1 cut(s)	600
DinI	GGCGCC	1 cut(s)	267
DpnI	GATC	2 cut(s)	131, 310
DpnII	GATC	2 cut(s)	129, 308
Eam1104I	CTCTTC	3 cut(s)	225, 414, 603
EarI	CTCTTC	3 cut(s)	225, 414, 603
EciI	GGCGGA	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	489
EcoICRI	GAGCTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	237
EgeI	GGCGCC	1 cut(s)	267
EheI	GGCGCC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	5 cut(s)	69, 176, 199, 487, 569
FaiI	YATR	6 cut(s)	57, 67, 174, 197, 485, 567
FatI	CATG	5 cut(s)	65, 172, 195, 483, 565
FauI	CCCGC	2 cut(s)	384, 395
Fnu4HI	GCNGC	2 cut(s)	243, 591
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	243, 591
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	2 cut(s)	267, 551
GluI	GCNGC	2 cut(s)	243, 591
HaeII	RGCGCY	1 cut(s)	269
HapII	CCGG	2 cut(s)	210, 570
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	2 cut(s)	268, 552
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	5 cut(s)	69, 176, 199, 487, 569
Hin6I	GCGC	2 cut(s)	266, 550
HinP1I	GCGC	2 cut(s)	266, 550
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	3 cut(s)	181, 219, 407
HpaII	CCGG	2 cut(s)	210, 570
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	3 cut(s)	180, 206, 508
Hpy188III	TCNNGA	4 cut(s)	61, 150, 227, 337
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	2 cut(s)	300, 384
HpyAV	CCTTC	2 cut(s)	112, 193
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	549, 587, 596
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	1 cut(s)	469
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	5 cut(s)	69, 176, 199, 487, 569
HspAI	GCGC	2 cut(s)	266, 550
KasI	GGCGCC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	129, 308
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	572
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	2 cut(s)	29, 404
MalI	GATC	2 cut(s)	131, 310
MboI	GATC	2 cut(s)	129, 308
MboII	GAAGA	8 cut(s)	108, 111, 124, 139, 242, 314, 431, 620
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	2 cut(s)	237, 388
MluCI	AATT	3 cut(s)	52, 102, 273
Mly113I	GGCGCC	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	175, 401
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	7 cut(s)	102, 147, 165, 310, 333, 555, 589
MroXI	GAANNNNTTC	2 cut(s)	131, 518
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	2 cut(s)	210, 570
MspR9I	CCNGG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	3 cut(s)	549, 587, 596
NarI	GGCGCC	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	2 cut(s)	129, 308
NlaIII	CATG	5 cut(s)	69, 176, 199, 487, 569
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	2 cut(s)	29, 404
NspI	RCATGY	1 cut(s)	569
PaeI	GCATGC	1 cut(s)	569
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PdmI	GAANNNNTTC	2 cut(s)	131, 518
PfeI	GAWTC	1 cut(s)	219
PflMI	CCANNNNNTGG	1 cut(s)	149
PinAI	ACCGGT	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	244, 592
PleI	GAGTC	2 cut(s)	175, 401
PluTI	GGCGCC	1 cut(s)	269
PpsI	GAGTC	2 cut(s)	175, 401
Ppu21I	YACGTR	1 cut(s)	470
PshAI	GACNNNNGTC	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	152
PstNI	CAGNNNCTG	2 cut(s)	343, 599
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	2 cut(s)	191, 468
RsaNI	GTAC	2 cut(s)	190, 467
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	243, 591
Sau3AI	GATC	2 cut(s)	129, 308
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	2 cut(s)	175, 401
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	237, 388
SetI	ASST	8 cut(s)	157, 204, 237, 353, 396, 472, 501, 577
SfoI	GGCGCC	1 cut(s)	267
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	3 cut(s)	185, 236, 545
SmoI	CTYRAG	3 cut(s)	185, 236, 545
SphI	GCATGC	1 cut(s)	569
Sse9I	AATT	3 cut(s)	52, 102, 273
SsiI	CCGC	4 cut(s)	160, 377, 388, 591
SspDI	GGCGCC	1 cut(s)	265
SspMI	CTAG	1 cut(s)	576
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	483
TaiI	ACGT	1 cut(s)	472
TasI	AATT	3 cut(s)	52, 102, 273
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	2 cut(s)	29, 404
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	2 cut(s)	29, 404
TspDTI	ATGAA	3 cut(s)	17, 212, 527
TspRI	CASTG	1 cut(s)	50
Van91I	CCANNNNNTGG	1 cut(s)	149
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	152
XceI	RCATGY	1 cut(s)	569
XmnI	GAANNNNTTC	2 cut(s)	131, 518
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.