Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Reverse (-)

64624655 .. 64625655

Gene Structure 1001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG434700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCAAGACCTGGTTTAACGAACCAGCACCAGGAAGAGAAATGCCGCTCGCCAGGCAAAGCTGTGAAAATCTTTCCTAGGCCTACTGCTGGACCTCTCCGTCCAGTTGTTCGCGCGCTTGCTTTGATTCCAGGGGAACTTGCAGCAACGATCGGGATCTCGGTTGATCATCGCAGGAAGAACCATTCTCTCAAGAGGTTTCAAGCCAATCTTCTTGGCCTGAAGACGTACAAGCAGAAGTTGGTTGTCTTCCCAAGGCGCAAGTTTAAGGCTGGTGATTCTGCAGCAGAGGAGGTAGCAAATGCAACCCCGCTCCAACGTCCTCTCTTGGCAATTCAACTGGGGAAACCAGTCAGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

120

Amino Acids

13.2

Weight (kDa)

11.25

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13e	PF01294	42 - 108	2.3e-18	Ribosomal protein L13e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	99
AccBSI	CCGCTC	2 cut(s)	48, 313
AccII	CGCG	2 cut(s)	114, 116
AciI	CCGC	2 cut(s)	46, 311
AclWI	GGATC	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	31, 89
AgsI	TTSAA	2 cut(s)	203, 338
AjnI	CCWGG	4 cut(s)	10, 30, 52, 130
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
AlwI	GGATC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	360
AoxI	GGCC	2 cut(s)	80, 217
ApeKI	GCWGC	2 cut(s)	143, 284
AspA2I	CCTAGG	1 cut(s)	77
AspLEI	GCGC	3 cut(s)	116, 118, 261
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	92
AvrII	CCTAGG	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	230, 241
BbvI	GCAGC	2 cut(s)	155, 296
BciT130I	CCWGG	4 cut(s)	12, 32, 54, 132
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	3 cut(s)	46, 144, 285
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	3 cut(s)	47, 145, 286
Bme1390I	CCNGG	4 cut(s)	12, 32, 54, 132
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmrFI	CCNGG	4 cut(s)	12, 32, 54, 132
BmrI	ACTGGG	1 cut(s)	350
BmuI	ACTGGG	1 cut(s)	350
BpiI	GAAGAC	2 cut(s)	230, 241
BpuEI	CTTGAG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	77, 131, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 89
Bse1I	ACTGG	3 cut(s)	104, 345, 350
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	4 cut(s)	12, 32, 54, 132
BseDI	CCNNGG	3 cut(s)	77, 131, 254
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	2 cut(s)	31, 89
BseNI	ACTGG	3 cut(s)	104, 345, 350
BsePI	GCGCGC	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	2 cut(s)	155, 296
Bsh1236I	CGCG	2 cut(s)	114, 116
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	82, 219
BsiEI	CGRYCG	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	31, 89
BsnI	GGCC	2 cut(s)	82, 219
Bsp143I	GATC	3 cut(s)	150, 156, 166
BspACI	CCGC	2 cut(s)	46, 311
BspANI	GGCC	2 cut(s)	82, 219
BspFNI	CGCG	2 cut(s)	114, 116
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	1 cut(s)	164
BsrBI	CCGCTC	2 cut(s)	48, 313
BsrI	ACTGG	3 cut(s)	104, 345, 350
BssECI	CCNNGG	3 cut(s)	77, 131, 254
BssHII	GCGCGC	1 cut(s)	114
BssMI	GATC	3 cut(s)	150, 156, 166
BssT1I	CCWWGG	2 cut(s)	77, 254
Bst2UI	CCWGG	4 cut(s)	12, 32, 54, 132
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	3 cut(s)	50, 116, 120
BstFNI	CGCG	2 cut(s)	114, 116
BstHHI	GCGC	3 cut(s)	116, 118, 261
BstKTI	GATC	3 cut(s)	153, 159, 169
BstMBI	GATC	3 cut(s)	150, 156, 166
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	4 cut(s)	12, 32, 54, 132
BstSCI	CCNGG	4 cut(s)	10, 30, 52, 130
BstSFI	CTRYAG	1 cut(s)	282
BstUI	CGCG	2 cut(s)	114, 116
BstV1I	GCAGC	2 cut(s)	155, 296
BstV2I	GAAGAC	2 cut(s)	230, 241
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	82, 219
BtgZI	GCGATG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	50, 116, 120
CaiI	CAGNNNCTG	1 cut(s)	360
CfoI	GCGC	3 cut(s)	116, 118, 261
Cfr13I	GGNCC	1 cut(s)	92
CsiI	ACCWGGT	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	229
CviJI	RGCY	5 cut(s)	62, 82, 206, 219, 272
CviKI_1	RGCY	5 cut(s)	62, 82, 206, 219, 272
CviQI	GTAC	1 cut(s)	229
DpnI	GATC	3 cut(s)	152, 158, 168
DpnII	GATC	3 cut(s)	150, 156, 166
DrdI	GACNNNNNNGTC	1 cut(s)	99
DseDI	GACNNNNNNGTC	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	77, 254
Eco147I	AGGCCT	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	242
EcoRII	CCWGG	4 cut(s)	10, 30, 52, 130
EcoT14I	CCWWGG	2 cut(s)	77, 254
ErhI	CCWWGG	2 cut(s)	77, 254
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FauI	CCCGC	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	46, 144, 285
Fsp4HI	GCNGC	3 cut(s)	46, 144, 285
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	3 cut(s)	115, 117, 260
GluI	GCNGC	3 cut(s)	46, 144, 285
HaeIII	GGCC	2 cut(s)	82, 219
HhaI	GCGC	3 cut(s)	116, 118, 261
Hin6I	GCGC	3 cut(s)	114, 116, 259
HinP1I	GCGC	3 cut(s)	114, 116, 259
HinfI	GANTC	2 cut(s)	127, 278
HphI	GGTGA	1 cut(s)	287
Hpy188III	TCNNGA	3 cut(s)	6, 154, 193
HpyCH4IV	ACGT	2 cut(s)	227, 319
HpyCH4V	TGCA	3 cut(s)	143, 284, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpySE526I	ACGT	2 cut(s)	227, 319
HspAI	GCGC	3 cut(s)	114, 116, 259
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	150, 156, 166
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	2 cut(s)	155, 296
MabI	ACCWGGT	1 cut(s)	10
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	2 cut(s)	227, 319
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	3 cut(s)	152, 158, 168
MbiI	CCGCTC	2 cut(s)	48, 313
MboI	GATC	3 cut(s)	150, 156, 166
MboII	GAAGA	5 cut(s)	47, 190, 203, 235, 241
MflI	RGATCY	1 cut(s)	156
MluCI	AATT	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	5 cut(s)	105, 189, 283, 286, 333
MseI	TTAA	2 cut(s)	17, 267
MspR9I	CCNGG	4 cut(s)	12, 32, 54, 132
MvaI	CCWGG	4 cut(s)	12, 32, 54, 132
MvnI	CGCG	2 cut(s)	114, 116
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	3 cut(s)	150, 156, 166
NmuCI	GTSAC	1 cut(s)	356
PauI	GCGCGC	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	127, 278
PkrI	GCNGC	3 cut(s)	47, 145, 286
Ple19I	CGATCG	1 cut(s)	153
Psp6I	CCWGG	4 cut(s)	10, 30, 52, 130
PspGI	CCWGG	4 cut(s)	10, 30, 52, 130
PspPI	GGNCC	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	156
PteI	GCGCGC	1 cut(s)	114
PvuI	CGATCG	1 cut(s)	153
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	17, 267
SatI	GCNGC	3 cut(s)	46, 144, 285
Sau3AI	GATC	3 cut(s)	150, 156, 166
Sau96I	GGNCC	1 cut(s)	92
ScrFI	CCNGG	4 cut(s)	12, 32, 54, 132
SetI	ASST	7 cut(s)	13, 64, 97, 200, 230, 297, 322
SexAI	ACCWGGT	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	333
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	2 cut(s)	46, 311
SspMI	CTAG	1 cut(s)	78
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	4 cut(s)	10, 30, 52, 130
StyI	CCWWGG	2 cut(s)	77, 254
TaiI	ACGT	2 cut(s)	230, 322
TasI	AATT	1 cut(s)	333
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	127, 278
Tru1I	TTAA	2 cut(s)	17, 267
Tru9I	TTAA	2 cut(s)	17, 267
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	2 cut(s)	143, 284
Tsp45I	GTSAC	1 cut(s)	356
TspGWI	ACGGA	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	92
XmaJI	CCTAGG	1 cut(s)	77
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.