pycom04g06880

Belongs to the eukaryotic ribosomal protein eL13 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
7169079 .. 7169351
273 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g06880.1

Sequence Viewer

Length: 273 bp
ATGTTGATCATTGTAGGAAGAATCGTTCTCTTAAGGATCTTCAAGCGACAGGCTGGTGATTCTCCTACAAAGGAAATTGCCCATGTGACCCAGCCCCAAGGCCCCTACCTTCCAATTGCATGTGAGAAGCCCACAATTGAGCTTGTGAAGGTTACCAATGAGTTGAAATCATTTAAGGCATATGACAAACTTCGCGTGGAGAGGATGAACACACGCCATATTGGTGCCATGCTCAAGAAGGCAGTAGAGGCAGAGAAGGAAGATAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

9.76

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AccII CGCG 1 cut(s) 195
AclWI GGATC 1 cut(s) 44
AflII CTTAAG 1 cut(s) 31
AgsI TTSAA 2 cut(s) 43, 166
AloI GAACNNNNNNTCC 2 cut(s) 9, 41
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 68
BanI GGYRCC 1 cut(s) 224
BclI TGATCA 1 cut(s) 6
BfrI CTTAAG 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 103, 226
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 210
BseYI CCCAGC 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 224
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 6, 36
BspANI GGCC 1 cut(s) 102
BspFNI CGCG 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 103, 226
BspPI GGATC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 224
BspTI CTTAAG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 2 cut(s) 6, 36
BssT1I CCWWGG 1 cut(s) 97
BstAFI CTTAAG 1 cut(s) 31
BstEII GGTNACC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 210
BstFNI CGCG 1 cut(s) 195
BstKTI GATC 2 cut(s) 9, 39
BstMBI GATC 2 cut(s) 6, 36
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 123
BstPI GGTNACC 1 cut(s) 151
BstUI CGCG 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 101
CviAII CATG 3 cut(s) 83, 120, 229
CviJI RGCY 5 cut(s) 53, 94, 102, 130, 142
CviKI_1 RGCY 5 cut(s) 53, 94, 102, 130, 142
DpnI GATC 2 cut(s) 8, 38
DpnII GATC 2 cut(s) 6, 36
Eco130I CCWWGG 1 cut(s) 97
Eco91I GGTNACC 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 101
EcoO65I GGTNACC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 3 cut(s) 86, 123, 232
FaiI YATR 6 cut(s) 84, 121, 181, 183, 219, 230
FatI CATG 3 cut(s) 82, 119, 228
FauNDI CATATG 1 cut(s) 181
FbaI TGATCA 1 cut(s) 6
FokI GGATG 1 cut(s) 217
GsaI CCCAGC 1 cut(s) 94
HaeIII GGCC 1 cut(s) 102
Hin1II CATG 3 cut(s) 86, 123, 232
HinfI GANTC 2 cut(s) 21, 59
HphI GGTGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 235
HpyAV CCTTC 4 cut(s) 119, 142, 232, 250
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
Hsp92II CATG 3 cut(s) 86, 123, 232
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 2 cut(s) 6, 36
LpnPI CCDG 3 cut(s) 35, 39, 104
MaeIII GTNAC 2 cut(s) 85, 151
MalI GATC 2 cut(s) 8, 38
MboI GATC 2 cut(s) 6, 36
MboII GAAGA 3 cut(s) 30, 31, 272
MfeI CAATTG 2 cut(s) 114, 135
MflI RGATCY 1 cut(s) 36
MluCI AATT 3 cut(s) 75, 114, 135
MnlI CCTC 2 cut(s) 195, 241
MseI TTAA 2 cut(s) 32, 174
MslI CAYNNNNRTG 1 cut(s) 222
MspCI CTTAAG 1 cut(s) 31
MunI CAATTG 2 cut(s) 114, 135
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeI CATATG 1 cut(s) 181
NdeII GATC 2 cut(s) 6, 36
NlaIII CATG 3 cut(s) 86, 123, 232
NlaIV GGNNCC 2 cut(s) 103, 226
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 123
PfeI GAWTC 2 cut(s) 21, 59
PspEI GGTNACC 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 103, 226
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 32, 174
Sau3AI GATC 2 cut(s) 6, 36
Sau96I GGNCC 1 cut(s) 101
SetI ASST 3 cut(s) 111, 144, 153
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 2 cut(s) 31, 233
SmoI CTYRAG 2 cut(s) 31, 233
Sse9I AATT 3 cut(s) 75, 114, 135
StyI CCWWGG 1 cut(s) 97
TasI AATT 3 cut(s) 75, 114, 135
TfiI GAWTC 2 cut(s) 21, 59
Tru1I TTAA 2 cut(s) 32, 174
Tru9I TTAA 2 cut(s) 32, 174
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 221
Vha464I CTTAAG 1 cut(s) 31
XceI RCATGY 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.