Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012636.1

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1408

Gene Structure 1408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012636.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggtgaagcacaacaatgttattcccggggagcacttcaggaagcactggcagaactatgtcaagacctggtttaaccaacccgcaaggaagaccaggaggagaaatgctcgccaggcaaaagctgtgaaaatctttcctaggcccactgctggacctctccgtccagttgttcgaggacagacattgaagtataacatgaaagtcagggctggtcgcggtttcactttggaagagttgaaggctgctggtatcccaaggaaacttgcaccaaccattggaatctcagttgatcatcgtaggaagaatcgttctctcgaggggtttcaagttaatgtgcttcgtctgaagacatacaagcagaaattagttgtcttcccaaggcgtgctggcaagtttaaggctggtgactctgcagcagaggagcttgcaaatgcaacccaggtccaaggtcctctgttgcccatccaacgcgagaaaccaactgttgagcttgtgaaggttactaaagatttgactgcagtcaaggcatatgacaagcttcgtgtggaacgtgtgaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

187

Amino Acids

21.41

Weight (kDa)

11.37

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	162
AccB7I	CCANNNNNTGG	1 cut(s)	278
AccII	CGCG	2 cut(s)	219, 474
AciI	CCGC	2 cut(s)	84, 219
AcuI	CTGAAG	2 cut(s)	22, 368
AfiI	CCNNNNNNNGG	2 cut(s)	152, 278
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	3 cut(s)	190, 241, 329
AjnI	CCWGG	4 cut(s)	68, 95, 114, 441
AloI	GAACNNNNNNTCC	2 cut(s)	295, 327
AluBI	AGCT	4 cut(s)	125, 427, 493, 541
AluI	AGCT	4 cut(s)	125, 427, 493, 541
Alw21I	GWGCWC	1 cut(s)	36
Ama87I	CYCGRG	2 cut(s)	26, 317
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	245, 416
AspA2I	CCTAGG	1 cut(s)	140
AspS9I	GGNCC	4 cut(s)	144, 155, 445, 452
AsuC2I	CCSGG	2 cut(s)	27, 28
AsuHPI	GGTGA	2 cut(s)	16, 419
AvaI	CYCGRG	2 cut(s)	26, 317
AvaII	GGWCC	3 cut(s)	155, 445, 452
AvrII	CCTAGG	1 cut(s)	140
BbsI	GAAGAC	3 cut(s)	98, 356, 367
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	232, 428
BccI	CCATC	1 cut(s)	473
BciT130I	CCWGG	4 cut(s)	70, 97, 116, 443
BciVI	GTATCC	1 cut(s)	263
BclI	TGATCA	1 cut(s)	292
BcnI	CCSGG	2 cut(s)	27, 28
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	2 cut(s)	414, 519
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	246, 417
BlnI	CCTAGG	1 cut(s)	140
BlsI	GCNGC	2 cut(s)	247, 418
Bme1390I	CCNGG	6 cut(s)	27, 28, 70, 97, 116, 443
Bme18I	GGWCC	3 cut(s)	155, 445, 452
BmeT110I	CYCGRG	2 cut(s)	26, 317
BmgT120I	GGNCC	4 cut(s)	144, 155, 445, 452
BmrFI	CCNGG	6 cut(s)	27, 28, 70, 97, 116, 443
BoxI	GACNNNNGTC	1 cut(s)	521
BpiI	GAAGAC	3 cut(s)	98, 356, 367
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpuMI	CCSGG	2 cut(s)	27, 28
BsaJI	CCNNGG	7 cut(s)	26, 27, 140, 257, 380, 441, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 278
Bse1I	ACTGG	2 cut(s)	53, 167
BseBI	CCWGG	4 cut(s)	70, 97, 116, 443
BseDI	CCNNGG	7 cut(s)	26, 27, 140, 257, 380, 441, 448
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	152, 278
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	53, 167
BseRI	GAGGAG	2 cut(s)	115, 437
BseXI	GCAGC	2 cut(s)	232, 428
Bsh1236I	CGCG	2 cut(s)	219, 474
BshFI	GGCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	2 cut(s)	26, 317
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	152, 278
BsnI	GGCC	1 cut(s)	145
BsoBI	CYCGRG	2 cut(s)	26, 317
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	2 cut(s)	84, 219
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	299
BspFNI	CGCG	2 cut(s)	219, 474
BspMAI	CTGCAG	2 cut(s)	418, 523
BsrI	ACTGG	2 cut(s)	53, 167
BssECI	CCNNGG	7 cut(s)	26, 27, 140, 257, 380, 441, 448
BssMI	GATC	1 cut(s)	292
BssT1I	CCWWGG	4 cut(s)	140, 257, 380, 448
Bst2UI	CCWGG	4 cut(s)	70, 97, 116, 443
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	4 cut(s)	112, 387, 391, 429
BstDEI	CTNAG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	465
BstFNI	CGCG	2 cut(s)	219, 474
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 527
BstNI	CCWGG	4 cut(s)	70, 97, 116, 443
BstPAI	GACNNNNGTC	1 cut(s)	521
BstSCI	CCNGG	6 cut(s)	25, 26, 68, 95, 114, 441
BstSFI	CTRYAG	2 cut(s)	414, 519
BstUI	CGCG	2 cut(s)	219, 474
BstV1I	GCAGC	2 cut(s)	232, 428
BstV2I	GAAGAC	3 cut(s)	98, 356, 367
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	465
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	46, 147
Cac8I	GCNNGC	4 cut(s)	112, 387, 391, 429
Cfr13I	GGNCC	4 cut(s)	144, 155, 445, 452
Cfr9I	CCCGGG	1 cut(s)	26
CsiI	ACCWGGT	1 cut(s)	68
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	8 cut(s)	125, 145, 212, 245, 404, 427, 493, 541
CviKI_1	RGCY	8 cut(s)	125, 145, 212, 245, 404, 427, 493, 541
DdeI	CTNAG	1 cut(s)	286
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	4 cut(s)	140, 257, 380, 448
Eco47I	GGWCC	3 cut(s)	155, 445, 452
Eco57I	CTGAAG	2 cut(s)	22, 368
Eco88I	CYCGRG	2 cut(s)	26, 317
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	4 cut(s)	68, 95, 114, 441
EcoT14I	CCWWGG	4 cut(s)	140, 257, 380, 448
ErhI	CCWWGG	4 cut(s)	140, 257, 380, 448
FaeI	CATG	1 cut(s)	202
FaiI	YATR	6 cut(s)	60, 195, 200, 355, 532, 534
FatI	CATG	1 cut(s)	198
FauI	CCCGC	1 cut(s)	91
FauNDI	CATATG	1 cut(s)	532
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	246, 417
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	2 cut(s)	246, 417
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	2 cut(s)	246, 417
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	3 cut(s)	282, 307, 410
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	2 cut(s)	16, 419
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	3 cut(s)	40, 64, 317
HpyAV	CCTTC	2 cut(s)	235, 493
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	5 cut(s)	269, 416, 431, 437, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 527
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	31, 424
Lsp1109I	GCAGC	2 cut(s)	232, 428
MabI	ACCWGGT	1 cut(s)	68
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	2 cut(s)	407, 502
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	5 cut(s)	103, 245, 316, 361, 367
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	6 cut(s)	93, 168, 170, 313, 415, 465
MseI	TTAA	3 cut(s)	75, 333, 399
MslI	CAYNNNNRTG	1 cut(s)	15
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	6 cut(s)	27, 28, 70, 97, 116, 443
MvaI	CCWGG	4 cut(s)	70, 97, 116, 443
MvnI	CGCG	2 cut(s)	219, 474
MwoI	GCNNNNNNNGC	2 cut(s)	116, 527
NciI	CCSGG	2 cut(s)	27, 28
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	407
PaeR7I	CTCGAG	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	282, 307
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	247, 418
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PpuMI	RGGWCCY	1 cut(s)	452
PshAI	GACNNNNGTC	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	4 cut(s)	68, 95, 114, 441
PspGI	CCWGG	4 cut(s)	68, 95, 114, 441
PspPI	GGNCC	4 cut(s)	144, 155, 445, 452
PspPPI	RGGWCCY	1 cut(s)	452
PstI	CTGCAG	2 cut(s)	418, 523
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	75, 333, 399
SatI	GCNGC	2 cut(s)	246, 417
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	4 cut(s)	144, 155, 445, 452
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	6 cut(s)	27, 28, 70, 97, 116, 443
SduI	GDGCHC	1 cut(s)	36
SexAI	ACCWGGT	1 cut(s)	68
SfcI	CTRYAG	2 cut(s)	414, 519
Sfr274I	CTCGAG	1 cut(s)	317
SinI	GGWCC	3 cut(s)	155, 445, 452
SlaI	CTCGAG	1 cut(s)	317
SmaI	CCCGGG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	1 cut(s)	365
SsiI	CCGC	2 cut(s)	84, 219
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	6 cut(s)	25, 26, 68, 95, 114, 441
StyI	CCWWGG	4 cut(s)	140, 257, 380, 448
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	2 cut(s)	175, 318
TasI	AATT	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	282, 307
Tru1I	TTAA	3 cut(s)	75, 333, 399
Tru9I	TTAA	3 cut(s)	75, 333, 399
TscAI	CASTG	2 cut(s)	53, 154
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	2 cut(s)	245, 416
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	215
TspGWI	ACGGA	1 cut(s)	152
TspMI	CCCGGG	1 cut(s)	26
TspRI	CASTG	2 cut(s)	53, 154
Van91I	CCANNNNNTGG	1 cut(s)	278
VpaK11BI	GGWCC	3 cut(s)	155, 445, 452
XhoI	CTCGAG	1 cut(s)	317
XmaI	CCCGGG	1 cut(s)	26
XmaJI	CCTAGG	1 cut(s)	140
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.