RLG00000018312

Belongs to the eukaryotic ribosomal protein eL13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001375
Physical Location & Seq
Forward (+)
28206163 .. 28207624
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018312

Sequence Viewer

Length: 624 bp
ATGGTGAAGCACAACAATGTTATTCCCGGGGAGCACTTCAGGAAGCACTGGCAGAACTATGTCAAGACCTGGTTTAACCAACCCGCAAGGAAGACCAGGAGGAGAAATGCTCGCCAGGCAAAAGCTGTGAAAATCTTTCCTAGGCCTACTGCTGGACCTCTGCGTCCAGTTGTTCGTGGGCAGACATTGAAGTATAACATGAAAGTCAGGGCCGGTCGCGGCTTCACTTTGGAAGAGTTGAAGGCTGCTGGTATCCCAAGGAAACTTGCACCAACCATTGGAATCTCAGTTGATCATCGTAGGAAGAATCGTTCTCTTGAGGGGTTTCAAGTTAATGTGCTTCGTCTGAAGACATACAAGCAAAAATTAGTTGTCTTCCCAAGGCGTGCTGGCAAGTTTAAGGCCGGTGACTCTGCAGCAGAGGAACTTGCAAATGCAACCCAGGTCCAGGGTCCTCTGTTGCCCATCCAACGTGAGAAACCAACTGTTGAGCTCGTGAAGGTTACTAAAGATTTGACTGCAGTCAAGGCATATGACAAGCTTCGTGTGGAACGTGTGAATGTACGTCATGTTGGGGCCAGAGCAAAGAAGGCAGCTGAGGCTGAAAAGGAAGAGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13e

Protein Analysis

208

Amino Acids

23.62

Weight (kDa)

11.16

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13e PF01294 7 - 185 1.9e-77 Ribosomal protein L13e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 278
AccII CGCG 1 cut(s) 219
AciI CCGC 2 cut(s) 84, 219
AcuI CTGAAG 2 cut(s) 22, 368
AfaI GTAC 1 cut(s) 564
AfiI CCNNNNNNNGG 3 cut(s) 152, 278, 448
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 3 cut(s) 190, 241, 329
AjnI CCWGG 5 cut(s) 68, 95, 114, 441, 447
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 4 cut(s) 125, 493, 541, 596
AluI AGCT 4 cut(s) 125, 493, 541, 596
Alw21I GWGCWC 2 cut(s) 36, 495
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 4 cut(s) 143, 210, 402, 576
ApeKI GCWGC 3 cut(s) 245, 416, 593
AspA2I CCTAGG 1 cut(s) 140
AspS9I GGNCC 5 cut(s) 155, 210, 445, 452, 576
AsuC2I CCSGG 2 cut(s) 27, 28
AsuHPI GGTGA 2 cut(s) 16, 419
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 3 cut(s) 155, 445, 452
AvrII CCTAGG 1 cut(s) 140
BanII GRGCYC 1 cut(s) 495
BauI CACGAG 1 cut(s) 494
BbsI GAAGAC 3 cut(s) 98, 356, 367
Bbv12I GWGCWC 2 cut(s) 36, 495
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 3 cut(s) 232, 428, 605
BccI CCATC 1 cut(s) 473
BciT130I CCWGG 5 cut(s) 70, 97, 116, 443, 449
BciVI GTATCC 1 cut(s) 263
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 2 cut(s) 27, 28
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 2 cut(s) 414, 519
BfuI GTATCC 1 cut(s) 263
BisI GCNGC 4 cut(s) 220, 246, 417, 594
BlnI CCTAGG 1 cut(s) 140
BlsI GCNGC 4 cut(s) 221, 247, 418, 595
Bme1390I CCNGG 7 cut(s) 27, 28, 70, 97, 116, 443, 449
Bme18I GGWCC 3 cut(s) 155, 445, 452
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 5 cut(s) 155, 210, 445, 452, 576
BmiI GGNNCC 2 cut(s) 453, 577
BmrFI CCNGG 7 cut(s) 27, 28, 70, 97, 116, 443, 449
BoxI GACNNNNGTC 1 cut(s) 521
BpiI GAAGAC 3 cut(s) 98, 356, 367
BplI GAGNNNNNCTC 2 cut(s) 94, 126
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 2 cut(s) 27, 28
BsaJI CCNNGG 7 cut(s) 26, 27, 140, 257, 380, 441, 448
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 278, 448
Bse118I RCCGGY 2 cut(s) 212, 404
Bse1I ACTGG 2 cut(s) 53, 167
BseBI CCWGG 5 cut(s) 70, 97, 116, 443, 449
BseDI CCNNGG 7 cut(s) 26, 27, 140, 257, 380, 441, 448
BseGI GGATG 1 cut(s) 465
BseLI CCNNNNNNNGG 3 cut(s) 152, 278, 448
BseMII CTCAG 2 cut(s) 300, 588
BseNI ACTGG 2 cut(s) 53, 167
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 3 cut(s) 232, 428, 605
Bsh1236I CGCG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 4 cut(s) 145, 212, 404, 578
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 2 cut(s) 36, 495
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 27, 213, 405
BslI CCNNNNNNNGG 3 cut(s) 152, 278, 448
BsnI GGCC 4 cut(s) 145, 212, 404, 578
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 36, 495
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 2 cut(s) 84, 219
BspANI GGCC 4 cut(s) 145, 212, 404, 578
BspCNI CTCAG 2 cut(s) 299, 589
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 453, 577
BspMAI CTGCAG 2 cut(s) 418, 523
BsrFI RCCGGY 2 cut(s) 212, 404
BsrI ACTGG 2 cut(s) 53, 167
BssAI RCCGGY 2 cut(s) 212, 404
BssECI CCNNGG 7 cut(s) 26, 27, 140, 257, 380, 441, 448
BssMI GATC 1 cut(s) 292
BssSI CACGAG 1 cut(s) 494
BssT1I CCWWGG 3 cut(s) 140, 257, 380
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 5 cut(s) 70, 97, 116, 443, 449
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 2 cut(s) 228, 606
BstC8I GCNNGC 3 cut(s) 112, 387, 391
BstDEI CTNAG 2 cut(s) 286, 597
BstF5I GGATG 1 cut(s) 465
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 4 cut(s) 116, 527, 590, 599
BstNI CCWGG 5 cut(s) 70, 97, 116, 443, 449
BstPAI GACNNNNGTC 1 cut(s) 521
BstSCI CCNGG 7 cut(s) 25, 26, 68, 95, 114, 441, 447
BstSFI CTRYAG 2 cut(s) 414, 519
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 232, 428, 605
BstV2I GAAGAC 3 cut(s) 98, 356, 367
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 4 cut(s) 145, 212, 404, 578
BtsCI GGATG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 3 cut(s) 112, 387, 391
Cfr10I RCCGGY 2 cut(s) 212, 404
Cfr13I GGNCC 5 cut(s) 155, 210, 445, 452, 576
Cfr9I CCCGGG 1 cut(s) 26
CseI GACGC 1 cut(s) 152
CsiI ACCWGGT 1 cut(s) 68
Csp6I GTAC 1 cut(s) 563
CviAII CATG 2 cut(s) 199, 569
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 2 cut(s) 286, 597
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DrdI GACNNNNNNGTC 1 cut(s) 162
DseDI GACNNNNNNGTC 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 228, 606
EarI CTCTTC 2 cut(s) 228, 606
Ecl136II GAGCTC 1 cut(s) 493
Eco130I CCWWGG 3 cut(s) 140, 257, 380
Eco147I AGGCCT 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 495
Eco47I GGWCC 3 cut(s) 155, 445, 452
Eco53kI GAGCTC 1 cut(s) 493
Eco57I CTGAAG 2 cut(s) 22, 368
Eco88I CYCGRG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 493
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 5 cut(s) 68, 95, 114, 441, 447
EcoT14I CCWWGG 3 cut(s) 140, 257, 380
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 3 cut(s) 140, 257, 380
FaeI CATG 2 cut(s) 202, 572
FaiI YATR 7 cut(s) 60, 195, 200, 355, 532, 534, 570
FatI CATG 2 cut(s) 198, 568
FauI CCCGC 1 cut(s) 91
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 4 cut(s) 220, 246, 417, 594
FokI GGATG 1 cut(s) 452
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 4 cut(s) 220, 246, 417, 594
FspBI CTAG 1 cut(s) 141
GluI GCNGC 4 cut(s) 220, 246, 417, 594
HaeIII GGCC 4 cut(s) 145, 212, 404, 578
HapII CCGG 3 cut(s) 27, 213, 405
HgaI GACGC 1 cut(s) 152
Hin1II CATG 2 cut(s) 202, 572
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 3 cut(s) 282, 307, 410
HpaII CCGG 3 cut(s) 27, 213, 405
HphI GGTGA 2 cut(s) 16, 419
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 4 cut(s) 40, 64, 317, 496
HpyAV CCTTC 3 cut(s) 235, 493, 583
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 3 cut(s) 472, 553, 565
HpyCH4V TGCA 5 cut(s) 269, 416, 431, 437, 521
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 527, 590, 599
HpyF3I CTNAG 2 cut(s) 286, 597
HpySE526I ACGT 3 cut(s) 472, 553, 565
Hsp92II CATG 2 cut(s) 202, 572
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 3 cut(s) 232, 428, 605
MabI ACCWGGT 1 cut(s) 68
MaeI CTAG 1 cut(s) 141
MaeII ACGT 3 cut(s) 472, 553, 565
MaeIII GTNAC 2 cut(s) 407, 502
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 6 cut(s) 103, 245, 316, 361, 367, 623
MhlI GDGCHC 2 cut(s) 36, 495
MluCI AATT 1 cut(s) 365
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 493
MnlI CCTC 6 cut(s) 93, 168, 313, 415, 465, 592
MseI TTAA 3 cut(s) 75, 333, 399
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 3 cut(s) 27, 213, 405
MspR9I CCNGG 7 cut(s) 27, 28, 70, 97, 116, 443, 449
MvaI CCWGG 5 cut(s) 70, 97, 116, 443, 449
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 4 cut(s) 116, 527, 590, 599
NciI CCSGG 2 cut(s) 27, 28
NdeI CATATG 1 cut(s) 532
NdeII GATC 1 cut(s) 292
NlaIII CATG 2 cut(s) 202, 572
NlaIV GGNNCC 2 cut(s) 453, 577
NmuCI GTSAC 1 cut(s) 407
PceI AGGCCT 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 550
PfeI GAWTC 2 cut(s) 282, 307
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 4 cut(s) 221, 247, 418, 595
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PpuMI RGGWCCY 1 cut(s) 452
PshAI GACNNNNGTC 1 cut(s) 521
Psp124BI GAGCTC 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 5 cut(s) 68, 95, 114, 441, 447
PspGI CCWGG 5 cut(s) 68, 95, 114, 441, 447
PspN4I GGNNCC 2 cut(s) 453, 577
PspPI GGNCC 5 cut(s) 155, 210, 445, 452, 576
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 2 cut(s) 418, 523
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 495
SaqAI TTAA 3 cut(s) 75, 333, 399
SatI GCNGC 4 cut(s) 220, 246, 417, 594
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 5 cut(s) 155, 210, 445, 452, 576
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 7 cut(s) 27, 28, 70, 97, 116, 443, 449
SduI GDGCHC 2 cut(s) 36, 495
SexAI ACCWGGT 1 cut(s) 68
SfcI CTRYAG 2 cut(s) 414, 519
SinI GGWCC 3 cut(s) 155, 445, 452
SmaI CCCGGG 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 1 cut(s) 365
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 2 cut(s) 84, 219
SspMI CTAG 1 cut(s) 141
SstI GAGCTC 1 cut(s) 495
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 7 cut(s) 25, 26, 68, 95, 114, 441, 447
StyI CCWWGG 3 cut(s) 140, 257, 380
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 3 cut(s) 475, 556, 568
TasI AATT 1 cut(s) 365
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 2 cut(s) 282, 307
Tru1I TTAA 3 cut(s) 75, 333, 399
Tru9I TTAA 3 cut(s) 75, 333, 399
TscAI CASTG 1 cut(s) 53
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 3 cut(s) 245, 416, 593
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 1 cut(s) 215
TspMI CCCGGG 1 cut(s) 26
TspRI CASTG 1 cut(s) 53
Van91I CCANNNNNTGG 1 cut(s) 278
VpaK11BI GGWCC 3 cut(s) 155, 445, 452
XmaI CCCGGG 1 cut(s) 26
XmaJI CCTAGG 1 cut(s) 140
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.