Rw1G039050

Belongs to the eukaryotic ribosomal protein eL13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001375
Physical Location & Seq
Reverse (-)
66634243 .. 66635444
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039050.1

Sequence Viewer

Length: 567 bp
ATGAAGCACAATAATGTTATCCCTGGGGAGCACTTCAGGAAGCACCGGCAGAACAATGTCAAGACCTGGTTTAACGAACCAGCACCAGGAAGAGAAATGGTGAGCACCGGGCTTTCTTATATTGCTTCTTCCTGCAAAGCTGTGAAAATCTTTCCTAGGCCTACTGCTGGACCTCTCCGTCCAGTTGTCAGGGCTCTCCGTGGCTTCACTCTGGAAGAGTTGAAGGTTGGTTTCTATATCCTATTGGCAATCATGCTTGCTTTGATTCCAGGGGAACTTGCAGCAACGATCAGGATCTCGGTTGATCATCGCAGGAAGAACCATTCTCTCAAGAGGTTTCAAGCCAATGTTCTTGGCCTGAAGACGTACCAGCAGAAGTTGGGTAATTGTCTTCCCAAGGCGCAAGCTGGTGATTCTGCAGCAGAGGAGGTATCAAATGCAACCCCGCTCCAACGTCCTCTCTTGGCAATTCAACAGGGGAAACCACTTGGTATTGAGCGGGTCAGTGTCCGCCATGTTGGGGCCAGGGCAAAGAAGTCCGCTGAGGCTAAGGAAGAAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13e

Protein Analysis

188

Amino Acids

20.83

Weight (kDa)

10.44

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13e PF01294 6 - 160 1.6e-24 Ribosomal protein L13e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 177
AccBSI CCGCTC 2 cut(s) 448, 499
AciI CCGC 4 cut(s) 446, 499, 511, 540
AclWI GGATC 1 cut(s) 302
AcuI CTGAAG 2 cut(s) 19, 380
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 3 cut(s) 86, 167, 520
AgsI TTSAA 3 cut(s) 223, 341, 473
AjnI CCWGG 5 cut(s) 22, 65, 85, 268, 524
AluBI AGCT 2 cut(s) 140, 407
AluI AGCT 2 cut(s) 140, 407
Alw21I GWGCWC 2 cut(s) 33, 107
AlwI GGATC 1 cut(s) 302
AoxI GGCC 3 cut(s) 158, 355, 522
ApeKI GCWGC 2 cut(s) 281, 419
AspA2I CCTAGG 1 cut(s) 155
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 2 cut(s) 170, 522
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 112, 422
AvaII GGWCC 1 cut(s) 170
AvrII CCTAGG 1 cut(s) 155
BanII GRGCYC 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 368, 383
Bbv12I GWGCWC 2 cut(s) 33, 107
BbvCI CCTCAGC 1 cut(s) 543
BbvI GCAGC 2 cut(s) 293, 431
BciT130I CCWGG 5 cut(s) 24, 67, 87, 270, 526
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 1 cut(s) 109
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 417
BisI GCNGC 2 cut(s) 282, 420
BlnI CCTAGG 1 cut(s) 155
BlsI GCNGC 2 cut(s) 283, 421
Bme1390I CCNGG 6 cut(s) 24, 67, 87, 109, 270, 526
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 170, 522
BmiI GGNNCC 1 cut(s) 523
BmrFI CCNGG 6 cut(s) 24, 67, 87, 109, 270, 526
BpiI GAAGAC 2 cut(s) 368, 383
Bpu10I CCTNAGC 2 cut(s) 543, 549
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 293
BsaJI CCNNGG 7 cut(s) 22, 23, 155, 199, 269, 396, 525
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 167, 520
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 293
BseBI CCWGG 5 cut(s) 24, 67, 87, 270, 526
BseDI CCNNGG 7 cut(s) 22, 23, 155, 199, 269, 396, 525
BseJI GATNNNNATC 1 cut(s) 293
BseLI CCNNNNNNNGG 3 cut(s) 86, 167, 520
BseMII CTCAG 1 cut(s) 534
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 2 cut(s) 293, 431
BshFI GGCC 3 cut(s) 160, 357, 524
BsiHKAI GWGCWC 2 cut(s) 33, 107
BsiSI CCGG 2 cut(s) 46, 108
BslI CCNNNNNNNGG 3 cut(s) 86, 167, 520
BsnI GGCC 3 cut(s) 160, 357, 524
Bsp1286I GDGCHC 3 cut(s) 33, 107, 196
Bsp143I GATC 3 cut(s) 288, 294, 304
BspACI CCGC 4 cut(s) 446, 499, 511, 540
BspANI GGCC 3 cut(s) 160, 357, 524
BspCNI CTCAG 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 523
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 1 cut(s) 302
BsrBI CCGCTC 2 cut(s) 448, 499
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 7 cut(s) 22, 23, 155, 199, 269, 396, 525
BssMI GATC 3 cut(s) 288, 294, 304
BssT1I CCWWGG 2 cut(s) 155, 396
Bst2UI CCWGG 5 cut(s) 24, 67, 87, 270, 526
Bst6I CTCTTC 2 cut(s) 85, 210
BstC8I GCNNGC 2 cut(s) 258, 405
BstDEI CTNAG 2 cut(s) 543, 549
BstDSI CCRYGG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 3 cut(s) 291, 297, 307
BstMBI GATC 3 cut(s) 288, 294, 304
BstNI CCWGG 5 cut(s) 24, 67, 87, 270, 526
BstSCI CCNGG 6 cut(s) 22, 65, 85, 107, 268, 524
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 2 cut(s) 293, 431
BstV2I GAAGAC 2 cut(s) 368, 383
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 3 cut(s) 160, 357, 524
BtgI CCRYGG 1 cut(s) 199
BtgZI GCGATG 1 cut(s) 293
BtsIMutI CAGTG 1 cut(s) 511
Cac8I GCNNGC 2 cut(s) 258, 405
CfoI GCGC 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 2 cut(s) 170, 522
CsiI ACCWGGT 1 cut(s) 65
Csp6I GTAC 1 cut(s) 367
CviAII CATG 2 cut(s) 253, 515
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 543, 549
DpnI GATC 3 cut(s) 290, 296, 306
DpnII GATC 3 cut(s) 288, 294, 304
DrdI GACNNNNNNGTC 1 cut(s) 177
DseDI GACNNNNNNGTC 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 85, 210
EarI CTCTTC 2 cut(s) 85, 210
EciI GGCGGA 1 cut(s) 500
Eco130I CCWWGG 2 cut(s) 155, 396
Eco147I AGGCCT 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 2 cut(s) 19, 380
EcoRII CCWGG 5 cut(s) 22, 65, 85, 268, 524
EcoT14I CCWWGG 2 cut(s) 155, 396
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 2 cut(s) 155, 396
FaeI CATG 2 cut(s) 256, 518
FaiI YATR 4 cut(s) 120, 237, 254, 516
FatI CATG 2 cut(s) 252, 514
FauI CCCGC 2 cut(s) 453, 492
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 282, 420
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 2 cut(s) 282, 420
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 402
GluI GCNGC 2 cut(s) 282, 420
HaeIII GGCC 3 cut(s) 160, 357, 524
HapII CCGG 2 cut(s) 46, 108
HhaI GCGC 1 cut(s) 403
Hin1II CATG 2 cut(s) 256, 518
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HinfI GANTC 2 cut(s) 265, 413
HpaII CCGG 2 cut(s) 46, 108
HphI GGTGA 2 cut(s) 112, 422
Hpy188III TCNNGA 5 cut(s) 37, 61, 212, 292, 331
HpyAV CCTTC 1 cut(s) 217
HpyCH4IV ACGT 2 cut(s) 365, 454
HpyCH4V TGCA 4 cut(s) 135, 281, 419, 440
HpyF3I CTNAG 2 cut(s) 543, 549
HpySE526I ACGT 2 cut(s) 365, 454
Hsp92II CATG 2 cut(s) 256, 518
HspAI GCGC 1 cut(s) 401
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 288, 294, 304
LmnI GCTCC 2 cut(s) 28, 453
Lsp1109I GCAGC 2 cut(s) 293, 431
MabI ACCWGGT 1 cut(s) 65
MaeI CTAG 1 cut(s) 156
MaeII ACGT 2 cut(s) 365, 454
MalI GATC 3 cut(s) 290, 296, 306
MbiI CCGCTC 2 cut(s) 448, 499
MboI GATC 3 cut(s) 288, 294, 304
MboII GAAGA 7 cut(s) 102, 120, 227, 328, 373, 383, 566
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 3 cut(s) 33, 107, 196
MluCI AATT 2 cut(s) 385, 468
MmeI TCCRAC 1 cut(s) 475
MnlI CCTC 6 cut(s) 183, 327, 418, 421, 468, 538
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 2 cut(s) 46, 108
MspR9I CCNGG 6 cut(s) 24, 67, 87, 109, 270, 526
MvaI CCWGG 5 cut(s) 24, 67, 87, 270, 526
NciI CCSGG 1 cut(s) 109
NdeII GATC 3 cut(s) 288, 294, 304
NlaIII CATG 2 cut(s) 256, 518
NlaIV GGNNCC 1 cut(s) 523
PasI CCCWGGG 1 cut(s) 23
PceI AGGCCT 1 cut(s) 160
PfeI GAWTC 2 cut(s) 265, 413
PkrI GCNGC 2 cut(s) 283, 421
Psp6I CCWGG 5 cut(s) 22, 65, 85, 268, 524
PspGI CCWGG 5 cut(s) 22, 65, 85, 268, 524
PspN4I GGNNCC 1 cut(s) 523
PspPI GGNCC 2 cut(s) 170, 522
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 294
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 282, 420
Sau3AI GATC 3 cut(s) 288, 294, 304
Sau96I GGNCC 2 cut(s) 170, 522
ScrFI CCNGG 6 cut(s) 24, 67, 87, 109, 270, 526
SduI GDGCHC 3 cut(s) 33, 107, 196
SetI ASST 9 cut(s) 68, 142, 175, 228, 338, 368, 409, 432, 457
SexAI ACCWGGT 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 2 cut(s) 385, 468
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 4 cut(s) 446, 499, 511, 540
SspMI CTAG 1 cut(s) 156
StuI AGGCCT 1 cut(s) 160
StyD4I CCNGG 6 cut(s) 22, 65, 85, 107, 268, 524
StyI CCWWGG 2 cut(s) 155, 396
TaiI ACGT 2 cut(s) 368, 457
TasI AATT 2 cut(s) 385, 468
TfiI GAWTC 2 cut(s) 265, 413
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 1 cut(s) 511
TseI GCWGC 2 cut(s) 281, 419
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 167, 188
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 170
XmaJI CCTAGG 1 cut(s) 155
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.