Prupe.2G323200_v2.0.a1

Belongs to the eukaryotic ribosomal protein eL13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001375
Physical Location & Seq
Reverse (-)
29951381 .. 29953296
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G323200.3

Sequence Viewer

Length: 624 bp
ATGGTGAAGCACAACAACGTTATCCCTAGCTCCCACTTCAGGAAACATTGGCAGAATTATGTCAAGACTTGGTTTAACCAACCTGCCAGGAAGACCAGGAGAAGAACTGCTCGCCAAAAGAAGGCTGTCAAAATCTTCCCTCGCCCAACTGCTGGACCTCTCCGTCCAATTGTTCATGGACAGACTTTGAAGTATAACATGAAAATTAGGGCTGGTAGGGGCTTTACTTTGGAAGAGTTGAAGTCTGCTGGGATACCAAAGAAACTTGCACCAACCATTGGGATCGCAGTTGATCATCGTAGGAAGAATCGTTCTCTTGAGGGTCTTCAAGCTAATGTGCAGCGACTGAAGACATACAAGGCCAAATTAGTTGTCTTCCCAAGACGTGCTGGCAAATTCAAGGCTGGTGATTCTGCCCCAGAGGAACTTGCTAATGCCACCCAGCTCCAAGGTTCCTACCTTCCAATTGCACGGGAGAAGCCTTCCGTTGAGCTAGTGAAGGTTACTGATGATTTGAAATCATTCAAGGCATATGACAAACTCCGTGTGGAAAGGATGAACCAACGTCATGTAGGTGCCAGGCTTAAGAAGGCAGCAGAGGCTGAGAAGGAAGAGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13e

Protein Analysis

208

Amino Acids

23.72

Weight (kDa)

10.91

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 162
Acc36I ACCTGC 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 575
AccB7I CCANNNNNTGG 2 cut(s) 152, 278
AclI AACGTT 1 cut(s) 18
AclWI GGATC 1 cut(s) 290
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 2 cut(s) 22, 368
AfiI CCNNNNNNNGG 4 cut(s) 39, 121, 152, 278
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 6 cut(s) 190, 241, 329, 400, 517, 526
AjiI CACGTC 1 cut(s) 386
AjnI CCWGG 3 cut(s) 86, 95, 578
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 4 cut(s) 30, 332, 445, 493
AluI AGCT 4 cut(s) 30, 332, 445, 493
AlwI GGATC 1 cut(s) 290
AlwNI CAGNNNCTG 2 cut(s) 346, 602
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 340, 593
ApoI RAATTY 1 cut(s) 395
ArsI GACNNNNNNTTYG 2 cut(s) 357, 389
Asp700I GAANNNNTTC 1 cut(s) 521
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 16, 419
AvaII GGWCC 1 cut(s) 155
BanI GGYRCC 1 cut(s) 575
BbsI GAAGAC 4 cut(s) 98, 317, 356, 367
BbvI GCAGC 2 cut(s) 352, 605
BciT130I CCWGG 3 cut(s) 88, 97, 580
BciVI GTATCC 1 cut(s) 246
BclI TGATCA 1 cut(s) 292
BfaI CTAG 2 cut(s) 27, 494
BfrI CTTAAG 1 cut(s) 584
BfuAI ACCTGC 1 cut(s) 91
BfuI GTATCC 1 cut(s) 246
BisI GCNGC 2 cut(s) 341, 594
BlsI GCNGC 2 cut(s) 342, 595
Bme1390I CCNGG 3 cut(s) 88, 97, 580
Bme18I GGWCC 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 454, 577
BmrFI CCNGG 3 cut(s) 88, 97, 580
BpiI GAAGAC 4 cut(s) 98, 317, 356, 367
BpuEI CTTGAG 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 448
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 121, 152, 278
BseBI CCWGG 3 cut(s) 88, 97, 580
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 1 cut(s) 561
BseLI CCNNNNNNNGG 4 cut(s) 39, 121, 152, 278
BseMII CTCAG 1 cut(s) 594
BseXI GCAGC 2 cut(s) 352, 605
BseYI CCCAGC 2 cut(s) 248, 441
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 575
BslI CCNNNNNNNGG 4 cut(s) 39, 121, 152, 278
BsnI GGCC 1 cut(s) 362
Bsp143I GATC 2 cut(s) 282, 292
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 1 cut(s) 595
BspLI GGNNCC 2 cut(s) 454, 577
BspMI ACCTGC 1 cut(s) 91
BspPI GGATC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 575
BspTI CTTAAG 1 cut(s) 584
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 2 cut(s) 282, 292
BssT1I CCWWGG 1 cut(s) 448
Bst2UI CCWGG 3 cut(s) 88, 97, 580
Bst6I CTCTTC 2 cut(s) 228, 606
BstAFI CTTAAG 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 112, 391
BstDEI CTNAG 1 cut(s) 603
BstF5I GGATG 1 cut(s) 561
BstKTI GATC 2 cut(s) 285, 295
BstMBI GATC 2 cut(s) 282, 292
BstMWI GCNNNNNNNGC 1 cut(s) 599
BstNI CCWGG 3 cut(s) 88, 97, 580
BstSCI CCNGG 3 cut(s) 86, 95, 578
BstV1I GCAGC 2 cut(s) 352, 605
BstV2I GAAGAC 4 cut(s) 98, 317, 356, 367
BsuI GTATCC 1 cut(s) 246
BsuRI GGCC 1 cut(s) 362
BtrI CACGTC 1 cut(s) 386
BtsCI GGATG 1 cut(s) 561
BveI ACCTGC 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 112, 391
CaiI CAGNNNCTG 2 cut(s) 346, 602
Cfr13I GGNCC 1 cut(s) 155
CviAII CATG 3 cut(s) 176, 199, 569
DdeI CTNAG 1 cut(s) 603
DpnI GATC 2 cut(s) 284, 294
DpnII GATC 2 cut(s) 282, 292
DrdI GACNNNNNNGTC 1 cut(s) 162
DseDI GACNNNNNNGTC 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 228, 606
EarI CTCTTC 2 cut(s) 228, 606
Eco130I CCWWGG 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 2 cut(s) 22, 368
EcoRII CCWGG 3 cut(s) 86, 95, 578
EcoT14I CCWWGG 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 3 cut(s) 179, 202, 572
FaiI YATR 8 cut(s) 60, 177, 195, 200, 355, 532, 534, 570
FatI CATG 3 cut(s) 175, 198, 568
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 2 cut(s) 341, 594
FokI GGATG 1 cut(s) 568
Fsp4HI GCNGC 2 cut(s) 341, 594
FspBI CTAG 2 cut(s) 27, 494
GluI GCNGC 2 cut(s) 341, 594
GsaI CCCAGC 2 cut(s) 252, 445
HaeIII GGCC 1 cut(s) 362
Hin1II CATG 3 cut(s) 179, 202, 572
HinfI GANTC 2 cut(s) 307, 410
HphI GGTGA 2 cut(s) 16, 419
Hpy188III TCNNGA 3 cut(s) 40, 64, 317
HpyAV CCTTC 6 cut(s) 115, 470, 492, 493, 583, 601
HpyCH4IV ACGT 3 cut(s) 18, 385, 565
HpyCH4V TGCA 3 cut(s) 269, 340, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 599
HpyF3I CTNAG 1 cut(s) 603
HpySE526I ACGT 3 cut(s) 18, 385, 565
Hsp92II CATG 3 cut(s) 179, 202, 572
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 2 cut(s) 282, 292
LmnI GCTCC 2 cut(s) 35, 450
Lsp1109I GCAGC 2 cut(s) 352, 605
MaeI CTAG 2 cut(s) 27, 494
MaeII ACGT 3 cut(s) 18, 385, 565
MaeIII GTNAC 1 cut(s) 502
MalI GATC 2 cut(s) 284, 294
MboI GATC 2 cut(s) 282, 292
MboII GAAGA 9 cut(s) 103, 114, 127, 245, 316, 317, 361, 367, 623
MfeI CAATTG 2 cut(s) 168, 465
MluCI AATT 6 cut(s) 55, 168, 204, 365, 395, 465
MnlI CCTC 5 cut(s) 150, 168, 313, 415, 592
MroXI GAANNNNTTC 1 cut(s) 521
MseI TTAA 2 cut(s) 75, 585
MslI CAYNNNNRTG 1 cut(s) 573
MspCI CTTAAG 1 cut(s) 584
MspR9I CCNGG 3 cut(s) 88, 97, 580
MunI CAATTG 2 cut(s) 168, 465
MvaI CCWGG 3 cut(s) 88, 97, 580
MwoI GCNNNNNNNGC 1 cut(s) 599
NdeI CATATG 1 cut(s) 532
NdeII GATC 2 cut(s) 282, 292
NlaIII CATG 3 cut(s) 179, 202, 572
NlaIV GGNNCC 2 cut(s) 454, 577
PdmI GAANNNNTTC 1 cut(s) 521
PfeI GAWTC 2 cut(s) 307, 410
PflMI CCANNNNNTGG 2 cut(s) 152, 278
PkrI GCNGC 2 cut(s) 342, 595
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 3 cut(s) 86, 95, 578
PspFI CCCAGC 2 cut(s) 248, 441
PspGI CCWGG 3 cut(s) 86, 95, 578
PspN4I GGNNCC 2 cut(s) 454, 577
PspPI GGNCC 1 cut(s) 155
PstNI CAGNNNCTG 2 cut(s) 346, 602
RseI CAYNNNNRTG 1 cut(s) 573
SaqAI TTAA 2 cut(s) 75, 585
SatI GCNGC 2 cut(s) 341, 594
Sau3AI GATC 2 cut(s) 282, 292
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 3 cut(s) 88, 97, 580
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 2 cut(s) 317, 584
SmoI CTYRAG 2 cut(s) 317, 584
Sse9I AATT 6 cut(s) 55, 168, 204, 365, 395, 465
SspMI CTAG 2 cut(s) 27, 494
StyD4I CCNGG 3 cut(s) 86, 95, 578
StyI CCWWGG 1 cut(s) 448
TaiI ACGT 3 cut(s) 21, 388, 568
TasI AATT 6 cut(s) 55, 168, 204, 365, 395, 465
TfiI GAWTC 2 cut(s) 307, 410
Tru1I TTAA 2 cut(s) 75, 585
Tru9I TTAA 2 cut(s) 75, 585
TseI GCWGC 2 cut(s) 340, 593
TspDTI ATGAA 3 cut(s) 164, 215, 572
TspGWI ACGGA 3 cut(s) 152, 475, 533
Van91I CCANNNNNTGG 2 cut(s) 152, 278
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 521
XspI CTAG 2 cut(s) 27, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.