FvH4_7g33500

Belongs to the eukaryotic ribosomal protein eL13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001375
Physical Location & Seq
Reverse (-)
23816325 .. 23818459
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33500.t1

Sequence Viewer

Length: 624 bp
ATGGTGAAACACAATAACGTTATCCCTGGGGAGCACTTCAGGAAGCACTGGCAGAACTATGTCAAGACCTGGTTTAACCAGCCAGCAAGGAAGACCAGGAGGAGAAATGCTCGCCAGGCTAAGGCTGTGAAAATCTTTCCTAGGCCTACCGCTGGACCTCTCCGTCCAGTTGTTCGTGGACAGACCTTGAAGTATAACATGAAGGTCAGGGCTGGTCGTGGCTTCACTCTGGAAGAGTTGAAGGCCGCAGGAATTCCAAGGAAACTTGCACCAACCATCGGGATCTCAGTCGATCATCGCAGGAGGAACCGTTCTCTTGAGGGATTTCAAACCAATGTTCTTCGCTTGAAGACATACAAGCAGAAGTTGGTTGTCTTCCCAAGGCGTGCTGGCAAGTTTAAGGCTGGTGATTCTGCAGCAGAGGAGCTAGCAAATGCAACCCAACTCCAGGGTCCTCTCTTGGCAATTCAACAGGAGAAACCAGTCACTGAGCTCGTGAAGGTCACCGCAGATATGAAGAAAGTCAATGCATATGACAAGCTTCGTATTGAGCGGGTAAATGTCCGTCATGTTGGAGCCAGGGCTAAGAGGGCAGCTGAGGCTGAGAAGGAAGAAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13e

Protein Analysis

208

Amino Acids

23.69

Weight (kDa)

11.24

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13e PF01294 7 - 185 1.4e-77 Ribosomal protein L13e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 162
AccBSI CCGCTC 1 cut(s) 553
AciI CCGC 4 cut(s) 150, 246, 507, 553
AclI AACGTT 1 cut(s) 18
AclWI GGATC 1 cut(s) 290
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 22
AfiI CCNNNNNNNGG 4 cut(s) 121, 152, 278, 448
AgsI TTSAA 5 cut(s) 190, 241, 329, 349, 470
AjnI CCWGG 6 cut(s) 25, 68, 95, 114, 447, 578
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 4 cut(s) 427, 493, 541, 596
AluI AGCT 4 cut(s) 427, 493, 541, 596
Alw21I GWGCWC 2 cut(s) 36, 495
AlwI GGATC 1 cut(s) 290
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 2 cut(s) 143, 243
ApeKI GCWGC 2 cut(s) 416, 593
ApoI RAATTY 1 cut(s) 252
AspA2I CCTAGG 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 155, 452
AsuHPI GGTGA 3 cut(s) 16, 419, 496
AsuNHI GCTAGC 1 cut(s) 427
AvaII GGWCC 2 cut(s) 155, 452
AvrII CCTAGG 1 cut(s) 140
BanII GRGCYC 1 cut(s) 495
BauI CACGAG 1 cut(s) 494
BbsI GAAGAC 3 cut(s) 98, 356, 367
Bbv12I GWGCWC 2 cut(s) 36, 495
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 2 cut(s) 428, 605
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 6 cut(s) 27, 70, 97, 116, 449, 580
BfaI CTAG 2 cut(s) 141, 428
BfmI CTRYAG 1 cut(s) 414
BisI GCNGC 3 cut(s) 246, 417, 594
BlnI CCTAGG 1 cut(s) 140
BlsI GCNGC 3 cut(s) 247, 418, 595
Bme1390I CCNGG 6 cut(s) 27, 70, 97, 116, 449, 580
Bme18I GGWCC 2 cut(s) 155, 452
BmgT120I GGNCC 2 cut(s) 155, 452
BmiI GGNNCC 3 cut(s) 308, 453, 577
BmrFI CCNGG 6 cut(s) 27, 70, 97, 116, 449, 580
BmtI GCTAGC 1 cut(s) 431
BpiI GAAGAC 3 cut(s) 98, 356, 367
BplI GAGNNNNNCTC 2 cut(s) 94, 126
BpmI CTGGAG 1 cut(s) 431
Bpu10I CCTNAGC 2 cut(s) 120, 597
BpuEI CTTGAG 1 cut(s) 338
BsaJI CCNNGG 7 cut(s) 25, 26, 140, 257, 380, 448, 579
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 152, 278, 448
Bse1I ACTGG 3 cut(s) 53, 167, 482
BseBI CCWGG 6 cut(s) 27, 70, 97, 116, 449, 580
BseDI CCNNGG 7 cut(s) 25, 26, 140, 257, 380, 448, 579
BseLI CCNNNNNNNGG 4 cut(s) 121, 152, 278, 448
BseMII CTCAG 4 cut(s) 300, 480, 588, 594
BseNI ACTGG 3 cut(s) 53, 167, 482
BseRI GAGGAG 2 cut(s) 115, 437
BseXI GCAGC 2 cut(s) 428, 605
BshFI GGCC 2 cut(s) 145, 245
BsiHKAI GWGCWC 2 cut(s) 36, 495
BslI CCNNNNNNNGG 4 cut(s) 121, 152, 278, 448
BsnI GGCC 2 cut(s) 145, 245
Bsp1286I GDGCHC 2 cut(s) 36, 495
Bsp143I GATC 2 cut(s) 282, 292
BspACI CCGC 4 cut(s) 150, 246, 507, 553
BspANI GGCC 2 cut(s) 145, 245
BspCNI CTCAG 4 cut(s) 299, 481, 589, 595
BspLI GGNNCC 3 cut(s) 308, 453, 577
BspMAI CTGCAG 1 cut(s) 418
BspOI GCTAGC 1 cut(s) 431
BspPI GGATC 1 cut(s) 290
BsrBI CCGCTC 1 cut(s) 553
BsrI ACTGG 3 cut(s) 53, 167, 482
BssECI CCNNGG 7 cut(s) 25, 26, 140, 257, 380, 448, 579
BssMI GATC 2 cut(s) 282, 292
BssSI CACGAG 1 cut(s) 494
BssT1I CCWWGG 3 cut(s) 140, 257, 380
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 6 cut(s) 27, 70, 97, 116, 449, 580
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 5 cut(s) 84, 112, 387, 391, 429
BstDEI CTNAG 6 cut(s) 120, 286, 489, 585, 597, 603
BstEII GGTNACC 1 cut(s) 502
BstKTI GATC 2 cut(s) 285, 295
BstMBI GATC 2 cut(s) 282, 292
BstMWI GCNNNNNNNGC 3 cut(s) 116, 590, 599
BstNI CCWGG 6 cut(s) 27, 70, 97, 116, 449, 580
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 6 cut(s) 25, 68, 95, 114, 447, 578
BstSFI CTRYAG 1 cut(s) 414
BstV1I GCAGC 2 cut(s) 428, 605
BstV2I GAAGAC 3 cut(s) 98, 356, 367
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 2 cut(s) 145, 245
BtgZI GCGATG 1 cut(s) 281
BtsIMutI CAGTG 2 cut(s) 46, 486
Cac8I GCNNGC 5 cut(s) 84, 112, 387, 391, 429
CaiI CAGNNNCTG 1 cut(s) 488
Cfr13I GGNCC 2 cut(s) 155, 452
CsiI ACCWGGT 1 cut(s) 68
CviAII CATG 2 cut(s) 199, 569
DdeI CTNAG 6 cut(s) 120, 286, 489, 585, 597, 603
DpnI GATC 2 cut(s) 284, 294
DpnII GATC 2 cut(s) 282, 292
DrdI GACNNNNNNGTC 1 cut(s) 162
DseDI GACNNNNNNGTC 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 493
Eco130I CCWWGG 3 cut(s) 140, 257, 380
Eco147I AGGCCT 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 495
Eco47I GGWCC 2 cut(s) 155, 452
Eco53kI GAGCTC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 22
Eco91I GGTNACC 1 cut(s) 502
EcoICRI GAGCTC 1 cut(s) 493
EcoO109I RGGNCCY 1 cut(s) 452
EcoO65I GGTNACC 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 252
EcoRII CCWGG 6 cut(s) 25, 68, 95, 114, 447, 578
EcoT14I CCWWGG 3 cut(s) 140, 257, 380
EcoT22I ATGCAT 1 cut(s) 532
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 3 cut(s) 140, 257, 380
FaeI CATG 2 cut(s) 202, 572
FaiI YATR 8 cut(s) 60, 195, 200, 355, 515, 532, 534, 570
FatI CATG 2 cut(s) 198, 568
FauI CCCGC 1 cut(s) 546
FauNDI CATATG 1 cut(s) 532
Fnu4HI GCNGC 3 cut(s) 246, 417, 594
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 3 cut(s) 246, 417, 594
FspBI CTAG 2 cut(s) 141, 428
GluI GCNGC 3 cut(s) 246, 417, 594
GsuI CTGGAG 1 cut(s) 431
HaeIII GGCC 2 cut(s) 145, 245
Hin1II CATG 2 cut(s) 202, 572
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 1 cut(s) 410
HphI GGTGA 3 cut(s) 16, 419, 496
Hpy166II GTNNAC 1 cut(s) 179
Hpy188III TCNNGA 6 cut(s) 40, 64, 230, 280, 317, 496
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 4 cut(s) 196, 235, 493, 601
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 269, 416, 437, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 590, 599
HpyF3I CTNAG 6 cut(s) 120, 286, 489, 585, 597, 603
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 2 cut(s) 202, 572
Kzo9I GATC 2 cut(s) 282, 292
LmnI GCTCC 3 cut(s) 31, 424, 575
Lsp1109I GCAGC 2 cut(s) 428, 605
MabI ACCWGGT 1 cut(s) 68
MaeI CTAG 2 cut(s) 141, 428
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 484, 502
MalI GATC 2 cut(s) 284, 294
MbiI CCGCTC 1 cut(s) 553
MboI GATC 2 cut(s) 282, 292
MboII GAAGA 7 cut(s) 103, 245, 332, 361, 367, 529, 623
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 2 cut(s) 36, 495
MluCI AATT 2 cut(s) 252, 465
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 8 cut(s) 93, 168, 297, 313, 415, 465, 582, 592
Mph1103I ATGCAT 1 cut(s) 532
MseI TTAA 2 cut(s) 75, 399
MspA1I CMGCKG 2 cut(s) 152, 596
MspR9I CCNGG 6 cut(s) 27, 70, 97, 116, 449, 580
MvaI CCWGG 6 cut(s) 27, 70, 97, 116, 449, 580
MwoI GCNNNNNNNGC 3 cut(s) 116, 590, 599
NdeI CATATG 1 cut(s) 532
NdeII GATC 2 cut(s) 282, 292
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 2 cut(s) 202, 572
NlaIV GGNNCC 3 cut(s) 308, 453, 577
NmuCI GTSAC 2 cut(s) 484, 502
NsiI ATGCAT 1 cut(s) 532
PasI CCCWGGG 1 cut(s) 26
PceI AGGCCT 1 cut(s) 145
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 3 cut(s) 247, 418, 595
PpuMI RGGWCCY 1 cut(s) 452
Psp124BI GAGCTC 1 cut(s) 495
Psp1406I AACGTT 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 6 cut(s) 25, 68, 95, 114, 447, 578
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 6 cut(s) 25, 68, 95, 114, 447, 578
PspN4I GGNNCC 3 cut(s) 308, 453, 577
PspPI GGNCC 2 cut(s) 155, 452
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 596
SacI GAGCTC 1 cut(s) 495
SaqAI TTAA 2 cut(s) 75, 399
SatI GCNGC 3 cut(s) 246, 417, 594
Sau3AI GATC 2 cut(s) 282, 292
Sau96I GGNCC 2 cut(s) 155, 452
ScrFI CCNGG 6 cut(s) 27, 70, 97, 116, 449, 580
SduI GDGCHC 2 cut(s) 36, 495
SexAI ACCWGGT 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 414
SinI GGWCC 2 cut(s) 155, 452
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 2 cut(s) 252, 465
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 4 cut(s) 150, 246, 507, 553
SspMI CTAG 2 cut(s) 141, 428
SstI GAGCTC 1 cut(s) 495
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 6 cut(s) 25, 68, 95, 114, 447, 578
StyI CCWWGG 3 cut(s) 140, 257, 380
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 291
TasI AATT 2 cut(s) 252, 465
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 2 cut(s) 75, 399
Tru9I TTAA 2 cut(s) 75, 399
TscAI CASTG 2 cut(s) 53, 493
TseFI GTSAC 2 cut(s) 484, 502
TseI GCWGC 2 cut(s) 416, 593
Tsp45I GTSAC 2 cut(s) 484, 502
TspDTI ATGAA 2 cut(s) 215, 530
TspGWI ACGGA 2 cut(s) 152, 554
TspRI CASTG 2 cut(s) 53, 493
VpaK11BI GGWCC 2 cut(s) 155, 452
XapI RAATTY 1 cut(s) 252
XmaJI CCTAGG 1 cut(s) 140
XspI CTAG 2 cut(s) 141, 428
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.