Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Reverse (-)

8063922 .. 8065550

Gene Structure 1629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAAGCACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCACTGGCAGAATTATGTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGCTAGACAGAAGAAGGCTGTGAAGATCTTCCCTCGTCCCACCTCTGGTCCTCTCCGACCTGTTGTTCATGGTCAGACACTTAAGTACAACATGAAAGTTAGAGCTGGAAAAGGATTCACTCTTGAAGAGCTTAAGGTTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCTGTTGATCACCGACGCAAGAACCGTTCTTTGGAGGGTCTTCAGTCCAATGTCCAAAGGTTAAAGACTTACAAGGCTAAGTTGGTGGTGTTCCCTCGCCGTTCCCGTCAAGTCAAGGCTGGTGATTCTACTCCAGAGGAGCTTGCCAATGCTACTCAAGTTCAAGGTGATTACATGCCAATTGCCAGTGTCAAGGCAGCTATGGAGCTAGTTAAGCTGACTGCAGATTTGAAGGCGTTCAAGGCTTACGATAAGATTCGTTTGGAGCGCACAAACGCACGTCATGCTGGTGCCAGAGCCAAGAGGGCTGCCGAGGCTGAGAAAGAAGAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

206

Amino Acids

23.49

Weight (kDa)

11.0

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13e	PF01294	6 - 184	4.9e-77	Ribosomal protein L13e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	572
AclI	AACGTT	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	149, 275, 313
AflII	CTTAAG	2 cut(s)	185, 236
AflIII	ACRYGT	1 cut(s)	100
AgsI	TTSAA	4 cut(s)	230, 446, 514, 523
AjiI	CACGTC	2 cut(s)	101, 563
AjnI	CCWGG	1 cut(s)	83
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AluBI	AGCT	7 cut(s)	27, 209, 235, 424, 482, 490, 499
AluI	AGCT	7 cut(s)	27, 209, 235, 424, 482, 490, 499
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	479, 590
ApoI	RAATTY	1 cut(s)	279
ArsI	GACNNNNNNTTYG	2 cut(s)	493, 525
Asp700I	GAANNNNTTC	2 cut(s)	131, 518
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	3 cut(s)	284, 416, 461
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	29
BbsI	GAAGAC	2 cut(s)	95, 314
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	491, 577
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	85
BciVI	GTATCC	1 cut(s)	260
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	2 cut(s)	108, 491
BfmI	CTRYAG	1 cut(s)	504
BfrI	CTTAAG	2 cut(s)	185, 236
BfuI	GTATCC	1 cut(s)	260
BglI	GCCNNNNNGGC	1 cut(s)	587
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	2 cut(s)	480, 591
BlsI	GCNGC	2 cut(s)	481, 592
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	22
BmgBI	CACGTC	2 cut(s)	101, 563
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	267, 574
BmrFI	CCNGG	1 cut(s)	85
BpiI	GAAGAC	2 cut(s)	95, 314
BpmI	CTGGAG	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 275, 313
Bse1I	ACTGG	2 cut(s)	50, 468
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	594
BseLI	CCNNNNNNNGG	3 cut(s)	149, 275, 313
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	50, 468
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	2 cut(s)	491, 577
BshNI	GGYRCC	1 cut(s)	572
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	3 cut(s)	149, 275, 313
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	129, 289
BspCNI	CTCAG	1 cut(s)	592
BspLI	GGNNCC	2 cut(s)	267, 574
BspMAI	CTGCAG	1 cut(s)	508
BspQI	GCTCTTC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	572
BspTI	CTTAAG	2 cut(s)	185, 236
BsrI	ACTGG	2 cut(s)	50, 468
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	2 cut(s)	129, 289
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	2 cut(s)	225, 603
BstAFI	CTTAAG	2 cut(s)	185, 236
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstC8I	GCNNGC	3 cut(s)	41, 81, 426
BstDEI	CTNAG	2 cut(s)	360, 600
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	2 cut(s)	132, 292
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	2 cut(s)	129, 289
BstMWI	GCNNNNNNNGC	5 cut(s)	496, 524, 566, 587, 596
BstNI	CCWGG	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	2 cut(s)	491, 577
BstV2I	GAAGAC	2 cut(s)	95, 314
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	260
BtrI	CACGTC	2 cut(s)	101, 563
BtsIMutI	CAGTG	2 cut(s)	43, 475
Cac8I	GCNNGC	3 cut(s)	41, 81, 426
CfoI	GCGC	1 cut(s)	552
Cfr13I	GGNCC	1 cut(s)	152
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	4 cut(s)	173, 196, 457, 566
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	360, 600
DpnI	GATC	2 cut(s)	131, 291
DpnII	GATC	2 cut(s)	129, 289
Eam1104I	CTCTTC	2 cut(s)	225, 603
EarI	CTCTTC	2 cut(s)	225, 603
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	4 cut(s)	176, 199, 460, 569
FaiI	YATR	6 cut(s)	57, 174, 197, 458, 485, 567
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	4 cut(s)	172, 195, 456, 565
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	480, 591
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	480, 591
FspBI	CTAG	2 cut(s)	108, 491
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	2 cut(s)	480, 591
GsuI	CTGGAG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	552
Hin1II	CATG	4 cut(s)	176, 199, 460, 569
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HinfI	GANTC	3 cut(s)	219, 407, 538
HphI	GGTGA	3 cut(s)	284, 416, 461
Hpy188I	TCNGA	3 cut(s)	161, 180, 278
Hpy188III	TCNNGA	4 cut(s)	22, 61, 227, 416
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	112, 508
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	3 cut(s)	15, 100, 562
HpyCH4V	TGCA	1 cut(s)	506
HpyF10VI	GCNNNNNNNGC	5 cut(s)	496, 524, 566, 587, 596
HpyF3I	CTNAG	2 cut(s)	360, 600
HpySE526I	ACGT	3 cut(s)	15, 100, 562
Hsp92II	CATG	4 cut(s)	176, 199, 460, 569
HspAI	GCGC	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	129, 289
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	4 cut(s)	271, 421, 487, 547
Lsp1109I	GCAGC	2 cut(s)	491, 577
MaeI	CTAG	2 cut(s)	108, 491
MaeII	ACGT	3 cut(s)	15, 100, 562
MalI	GATC	2 cut(s)	131, 291
MboI	GATC	2 cut(s)	129, 289
MboII	GAAGA	7 cut(s)	100, 124, 127, 139, 242, 314, 620
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	3 cut(s)	52, 279, 462
MmeI	TCCRAC	2 cut(s)	184, 293
MnlI	CCTC	8 cut(s)	147, 157, 165, 310, 387, 412, 579, 589
MroXI	GAANNNNTTC	2 cut(s)	131, 518
MseI	TTAA	5 cut(s)	72, 186, 237, 344, 495
MslI	CAYNNNNRTG	1 cut(s)	570
MspCI	CTTAAG	2 cut(s)	185, 236
MspR9I	CCNGG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	5 cut(s)	496, 524, 566, 587, 596
NdeII	GATC	2 cut(s)	129, 289
NlaIII	CATG	4 cut(s)	176, 199, 460, 569
NlaIV	GGNNCC	2 cut(s)	267, 574
NmeAIII	GCCGAG	1 cut(s)	619
NspI	RCATGY	1 cut(s)	460
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	2 cut(s)	304, 385
PdmI	GAANNNNTTC	2 cut(s)	131, 518
PfeI	GAWTC	3 cut(s)	219, 407, 538
PkrI	GCNGC	2 cut(s)	481, 592
Psp124BI	GAGCTC	1 cut(s)	29
Psp1406I	AACGTT	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	267, 574
PspPI	GGNCC	1 cut(s)	152
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	570
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	5 cut(s)	72, 186, 237, 344, 495
SatI	GCNGC	2 cut(s)	480, 591
Sau3AI	GATC	2 cut(s)	129, 289
Sau96I	GGNCC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	29
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	3 cut(s)	185, 236, 438
SmoI	CTYRAG	3 cut(s)	185, 236, 438
Sse9I	AATT	3 cut(s)	52, 279, 462
SspMI	CTAG	2 cut(s)	108, 491
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	3 cut(s)	18, 103, 565
TasI	AATT	3 cut(s)	52, 279, 462
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	3 cut(s)	219, 407, 538
Tru1I	TTAA	5 cut(s)	72, 186, 237, 344, 495
Tru9I	TTAA	5 cut(s)	72, 186, 237, 344, 495
TscAI	CASTG	2 cut(s)	50, 475
TseI	GCWGC	2 cut(s)	479, 590
TspDTI	ATGAA	3 cut(s)	17, 161, 212
TspRI	CASTG	2 cut(s)	50, 475
Vha464I	CTTAAG	2 cut(s)	185, 236
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	1 cut(s)	460
XmnI	GAANNNNTTC	2 cut(s)	131, 518
XspI	CTAG	2 cut(s)	108, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.