Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Forward (+)

1778521 .. 1779802

Gene Structure 1282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026270

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGATTTAACTGAGGTTTTTGGCATGATAAACTCACTGTGTTGCTTAAATCGTGTAATGAAGCACAATAATGTTATCCCTGGGGAGCACTTCAGGAAGCACCGGCAGAACAATGTCAAGACCTGGTTTAACGAACCAGCACCAGGAAGAGAAATGGTGAGCACCGGGCTTTCTTATATTGCTTCTTCCTGCAAAGCTGTGAAAATCTTTTCTAGGCCTACTGCTGTACCTCTCCGTCCAGTTGTTCGTGGACAGACATTGAAGCTTGCTTTGATTCCAGGGGAACTTGCAGCAACGATCGGGATCTCGGTTGATCATCGCAGGAAGAACCATTCTCTCAAGAGGTTTCAAGCCAATGTTCTTGGCCTGAAGACGTACAAGCAGAAGTTGGTTAATTGTCTTCCCAAGGCGCAAGCTGGTGATTCTGCAGCAGAGGAGGTAGCAAATGCAACCCCGCTCCAACGTCCTCTCTTGGCAATTCAACAGGGGAAACCAGTCAGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

169

Amino Acids

18.54

Weight (kDa)

10.19

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13e	PF01294	25 - 88	5.5e-10	Ribosomal protein L13e
Ribosomal_L13e	PF01294	87 - 162	1.3e-15	Ribosomal protein L13e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	457
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	1 cut(s)	311
AcuI	CTGAAG	2 cut(s)	76, 389
AfaI	GTAC	2 cut(s)	228, 377
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	262, 350, 482
AjnI	CCWGG	4 cut(s)	79, 122, 142, 277
AluBI	AGCT	3 cut(s)	197, 265, 416
AluI	AGCT	3 cut(s)	197, 265, 416
Alw21I	GWGCWC	2 cut(s)	90, 164
AlwI	GGATC	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	504
AoxI	GGCC	2 cut(s)	215, 364
ApeKI	GCWGC	2 cut(s)	290, 428
AspLEI	GCGC	1 cut(s)	412
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	169, 431
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BbsI	GAAGAC	2 cut(s)	377, 392
Bbv12I	GWGCWC	2 cut(s)	90, 164
BbvI	GCAGC	2 cut(s)	302, 440
BciT130I	CCWGG	4 cut(s)	81, 124, 144, 279
BclI	TGATCA	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	166
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	426
BisI	GCNGC	2 cut(s)	291, 429
BlsI	GCNGC	2 cut(s)	292, 430
Bme1390I	CCNGG	5 cut(s)	81, 124, 144, 166, 279
BmrFI	CCNGG	5 cut(s)	81, 124, 144, 166, 279
BpiI	GAAGAC	2 cut(s)	377, 392
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	302
BsaJI	CCNNGG	4 cut(s)	79, 80, 278, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	2 cut(s)	239, 494
Bse8I	GATNNNNATC	1 cut(s)	302
BseBI	CCWGG	4 cut(s)	81, 124, 144, 279
BseDI	CCNNGG	4 cut(s)	79, 80, 278, 405
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	239, 494
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	2 cut(s)	302, 440
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	217, 366
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	2 cut(s)	90, 164
BsiSI	CCGG	2 cut(s)	103, 165
BslI	CCNNNNNNNGG	1 cut(s)	143
BsnI	GGCC	2 cut(s)	217, 366
Bsp1286I	GDGCHC	2 cut(s)	90, 164
Bsp143I	GATC	3 cut(s)	297, 303, 313
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	2 cut(s)	217, 366
BspCNI	CTCAG	1 cut(s)	4
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	1 cut(s)	311
BsrBI	CCGCTC	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	239, 494
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	4 cut(s)	79, 80, 278, 405
BssMI	GATC	3 cut(s)	297, 303, 313
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	4 cut(s)	81, 124, 144, 279
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	267, 414
BstDEI	CTNAG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	3 cut(s)	300, 306, 316
BstMBI	GATC	3 cut(s)	297, 303, 313
BstMCI	CGRYCG	1 cut(s)	300
BstNI	CCWGG	4 cut(s)	81, 124, 144, 279
BstSCI	CCNGG	5 cut(s)	79, 122, 142, 164, 277
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	302, 440
BstV2I	GAAGAC	2 cut(s)	377, 392
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	217, 366
BtgZI	GCGATG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	35, 502
Cac8I	GCNNGC	2 cut(s)	267, 414
CaiI	CAGNNNCTG	1 cut(s)	504
CfoI	GCGC	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	102
CsiI	ACCWGGT	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	227, 376
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	7 cut(s)	169, 197, 217, 265, 353, 366, 416
CviKI_1	RGCY	7 cut(s)	169, 197, 217, 265, 353, 366, 416
CviQI	GTAC	2 cut(s)	227, 376
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	3 cut(s)	299, 305, 315
DpnII	GATC	3 cut(s)	297, 303, 313
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	405
Eco147I	AGGCCT	1 cut(s)	217
Eco57I	CTGAAG	2 cut(s)	76, 389
EcoRII	CCWGG	4 cut(s)	79, 122, 142, 277
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	1 cut(s)	28
FaiI	YATR	2 cut(s)	26, 177
FatI	CATG	1 cut(s)	24
FauI	CCCGC	1 cut(s)	462
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	291, 429
Fsp4HI	GCNGC	2 cut(s)	291, 429
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	2 cut(s)	291, 429
HaeIII	GGCC	2 cut(s)	217, 366
HapII	CCGG	2 cut(s)	103, 165
HhaI	GCGC	1 cut(s)	412
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	274, 422
HpaII	CCGG	2 cut(s)	103, 165
HphI	GGTGA	2 cut(s)	169, 431
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188III	TCNNGA	4 cut(s)	94, 118, 301, 340
Hpy8I	GTNNAC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	2 cut(s)	374, 463
HpyCH4V	TGCA	4 cut(s)	192, 290, 428, 449
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	2 cut(s)	374, 463
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	1 cut(s)	410
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	297, 303, 313
LmnI	GCTCC	2 cut(s)	85, 462
Lsp1109I	GCAGC	2 cut(s)	302, 440
MabI	ACCWGGT	1 cut(s)	122
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	2 cut(s)	374, 463
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	3 cut(s)	299, 305, 315
MbiI	CCGCTC	1 cut(s)	457
MboI	GATC	3 cut(s)	297, 303, 313
MboII	GAAGA	5 cut(s)	159, 177, 337, 382, 392
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	90, 164
MluCI	AATT	2 cut(s)	394, 477
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	6 cut(s)	7, 240, 336, 427, 430, 477
MseI	TTAA	4 cut(s)	8, 47, 129, 393
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	2 cut(s)	103, 165
MspR9I	CCNGG	5 cut(s)	81, 124, 144, 166, 279
MvaI	CCWGG	4 cut(s)	81, 124, 144, 279
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	3 cut(s)	297, 303, 313
NlaIII	CATG	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	500
PasI	CCCWGGG	1 cut(s)	80
PceI	AGGCCT	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	274, 422
PkrI	GCNGC	2 cut(s)	292, 430
Ple19I	CGATCG	1 cut(s)	300
Psp6I	CCWGG	4 cut(s)	79, 122, 142, 277
PspGI	CCWGG	4 cut(s)	79, 122, 142, 277
PstI	CTGCAG	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	504
PsuI	RGATCY	1 cut(s)	303
PvuI	CGATCG	1 cut(s)	300
RsaI	GTAC	2 cut(s)	228, 377
RsaNI	GTAC	2 cut(s)	227, 376
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	4 cut(s)	8, 47, 129, 393
SatI	GCNGC	2 cut(s)	291, 429
Sau3AI	GATC	3 cut(s)	297, 303, 313
ScrFI	CCNGG	5 cut(s)	81, 124, 144, 166, 279
SduI	GDGCHC	2 cut(s)	90, 164
SexAI	ACCWGGT	1 cut(s)	122
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	394, 477
SseBI	AGGCCT	1 cut(s)	217
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	1 cut(s)	213
StuI	AGGCCT	1 cut(s)	217
StyD4I	CCNGG	5 cut(s)	79, 122, 142, 164, 277
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	2 cut(s)	377, 466
TasI	AATT	2 cut(s)	394, 477
TfiI	GAWTC	2 cut(s)	274, 422
Tru1I	TTAA	4 cut(s)	8, 47, 129, 393
Tru9I	TTAA	4 cut(s)	8, 47, 129, 393
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	2 cut(s)	290, 428
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	42
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.