Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Reverse (-)

67888040 .. 67888811

Gene Structure 772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG418400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAAGGTCAGGGCTCTCCGTGGCTTCACTCTGGAAGAGTTGAAGGTTGGCGCGCTTGCTTTGATTCCAGGGGAACTTGCAGCAACGATCGGGATCTCGGTTGATCATCGCAGGAAGAACCATTCTCTCAAGAGGTTTCAAGCCAATCTTCTTGGCCTGAAGACGTACAAGCAGAAGTTGGTTGTCTTCCCAAGGCGCAAGTTTAAGGCTGGTGATTCTGCAGCAGAGGAGGTAGCAAATGCAACCCCGCTCCAACGTCCTCTCTTGGCAATTCAACTGGGGAAACCAGTCAGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

99

Amino Acids

10.91

Weight (kDa)

10.81

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13e	PF01294	1 - 87	6e-25	Ribosomal protein L13e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	250
AccII	CGCG	1 cut(s)	53
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	167
AgsI	TTSAA	3 cut(s)	43, 140, 275
AjnI	CCWGG	1 cut(s)	67
AlwI	GGATC	1 cut(s)	101
AlwNI	CAGNNNCTG	1 cut(s)	297
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	80, 221
AspLEI	GCGC	3 cut(s)	53, 55, 198
AsuHPI	GGTGA	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	167, 178
BbvI	GCAGC	2 cut(s)	92, 233
BciT130I	CCWGG	1 cut(s)	69
BclI	TGATCA	1 cut(s)	103
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	2 cut(s)	81, 222
BlsI	GCNGC	2 cut(s)	82, 223
Bme1390I	CCNGG	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	69
BmrI	ACTGGG	1 cut(s)	287
BmuI	ACTGGG	1 cut(s)	287
BpiI	GAAGAC	2 cut(s)	167, 178
BpuEI	CTTGAG	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	19, 68, 191
Bse1I	ACTGG	2 cut(s)	282, 287
Bse8I	GATNNNNATC	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	3 cut(s)	19, 68, 191
BseJI	GATNNNNATC	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	282, 287
BsePI	GCGCGC	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	92, 233
Bsh1236I	CGCG	1 cut(s)	53
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	90
BsnI	GGCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	3 cut(s)	87, 93, 103
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	53
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	282, 287
BssECI	CCNNGG	3 cut(s)	19, 68, 191
BssHII	GCGCGC	1 cut(s)	51
BssMI	GATC	3 cut(s)	87, 93, 103
BssT1I	CCWWGG	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	53, 57
BstDSI	CCRYGG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	53
BstHHI	GCGC	3 cut(s)	53, 55, 198
BstKTI	GATC	3 cut(s)	90, 96, 106
BstMBI	GATC	3 cut(s)	87, 93, 103
BstMCI	CGRYCG	1 cut(s)	90
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	92, 233
BstV2I	GAAGAC	2 cut(s)	167, 178
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	53, 57
CaiI	CAGNNNCTG	1 cut(s)	297
CfoI	GCGC	3 cut(s)	53, 55, 198
Csp6I	GTAC	1 cut(s)	166
CviJI	RGCY	5 cut(s)	14, 24, 143, 156, 209
CviKI_1	RGCY	5 cut(s)	14, 24, 143, 156, 209
CviQI	GTAC	1 cut(s)	166
DpnI	GATC	3 cut(s)	89, 95, 105
DpnII	GATC	3 cut(s)	87, 93, 103
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	191
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FauI	CCCGC	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	81, 222
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	81, 222
GlaI	GCGC	3 cut(s)	52, 54, 197
GluI	GCNGC	2 cut(s)	81, 222
HaeIII	GGCC	1 cut(s)	156
HhaI	GCGC	3 cut(s)	53, 55, 198
Hin6I	GCGC	3 cut(s)	51, 53, 196
HinP1I	GCGC	3 cut(s)	51, 53, 196
HinfI	GANTC	2 cut(s)	64, 215
HphI	GGTGA	1 cut(s)	224
Hpy188III	TCNNGA	3 cut(s)	32, 91, 130
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	2 cut(s)	164, 256
HpyCH4V	TGCA	3 cut(s)	80, 221, 242
HpySE526I	ACGT	2 cut(s)	164, 256
HspAI	GCGC	3 cut(s)	51, 53, 196
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	87, 93, 103
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	7 cut(s)	17, 54, 81, 97, 170, 195, 263
Lsp1109I	GCAGC	2 cut(s)	92, 233
MaeII	ACGT	2 cut(s)	164, 256
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	3 cut(s)	89, 95, 105
MbiI	CCGCTC	1 cut(s)	250
MboI	GATC	3 cut(s)	87, 93, 103
MboII	GAAGA	5 cut(s)	47, 127, 140, 172, 178
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	4 cut(s)	126, 220, 223, 270
MseI	TTAA	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	53
NdeII	GATC	3 cut(s)	87, 93, 103
NmuCI	GTSAC	1 cut(s)	293
PauI	GCGCGC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	64, 215
PkrI	GCNGC	2 cut(s)	82, 223
Ple19I	CGATCG	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	93
PteI	GCGCGC	1 cut(s)	51
PvuI	CGATCG	1 cut(s)	90
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	81, 222
Sau3AI	GATC	3 cut(s)	87, 93, 103
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	6 cut(s)	9, 48, 137, 167, 234, 259
SfcI	CTRYAG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	191
TaiI	ACGT	2 cut(s)	167, 259
TasI	AATT	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	64, 215
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	80, 221
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.