MD11G1308800.v1.1

Belongs to the eukaryotic ribosomal protein eL13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001375
Physical Location & Seq
Reverse (-)
42267484 .. 42269280
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1308800.v1.1.491

Sequence Viewer

Length: 624 bp
ATGGTGAAGCACAACAACGTTATCCCGAGCTCTCACTTCAGGAAGCATTGGCAGAACTATGTCAAGACCTGGTTTAACCAGCCTGCCAGGAAGACCCGCAGAAGAACTGCTCGGCAGAAGAAGGCTGTGAAAATCTTCCCTCGGCCGACCACCGGCCCACTCCGTCCCATTGTTCATGGACAGACGTTGAAGTACAACATGAAAGTGAGGGCTGGCAGGGGATTTACTCTGGAAGAGTTGAAGTCTGCTGGCATTCCAAAGAAGCTCGCACCAACCATTGGAATCGCAGTTGACCATCGCAGGAAGAATCGTTCCCTTGAGGGACTTCAAGCTAATGTGCAGCGTCTGAAGACATACAAGGCCAAATTAGTGGTCTTCCCAAGACGCGCTAAGCAGTTCAAGGCGGGCGATTCTCCTGCAGAGGAACTTGCCAATGCCACCCAGCTCCATGGCCCCTACCTTCCAATTGCACGTGAGAAGCCTACGGTTGAGCTTGTGAAGGTTACTGATGAGTTGAAGTCGTTCAAGGCATATGACAAACTCCGTGTGGAGAGGATGAACAAACGCCATGTTGGTGCCAGGCTTAAGAAGGCAGCGGAGGCCGAAAAGGAAGAAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13e

Protein Analysis

208

Amino Acids

23.86

Weight (kDa)

10.92

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13e PF01294 7 - 185 8e-79 Ribosomal protein L13e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 575
AccB7I CCANNNNNTGG 1 cut(s) 278
AccII CGCG 1 cut(s) 387
AciI CCGC 3 cut(s) 97, 404, 596
AclI AACGTT 1 cut(s) 18
AcoI YGGCCR 1 cut(s) 143
AcuI CTGAAG 2 cut(s) 22, 368
AcvI CACGTG 1 cut(s) 473
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 152, 278
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 6 cut(s) 190, 241, 329, 400, 517, 526
AjnI CCWGG 3 cut(s) 68, 86, 578
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 5 cut(s) 30, 265, 332, 445, 493
AluI AGCT 5 cut(s) 30, 265, 332, 445, 493
Alw21I GWGCWC 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 346
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 5 cut(s) 143, 154, 360, 451, 600
ApeKI GCWGC 2 cut(s) 340, 593
ArsI GACNNNNNNTTYG 2 cut(s) 357, 389
Asp700I GAANNNNTTC 2 cut(s) 134, 521
AspLEI GCGC 1 cut(s) 389
AspS9I GGNCC 2 cut(s) 155, 452
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 25
BanI GGYRCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 32
BbrPI CACGTG 1 cut(s) 473
BbsI GAAGAC 3 cut(s) 98, 356, 367
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 352, 605
BccI CCATC 1 cut(s) 303
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 3 cut(s) 70, 88, 580
BfmI CTRYAG 1 cut(s) 417
BfrI CTTAAG 1 cut(s) 584
BisI GCNGC 2 cut(s) 341, 594
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 2 cut(s) 342, 595
Bme1390I CCNGG 3 cut(s) 70, 88, 580
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 155, 452
BmiI GGNNCC 2 cut(s) 454, 577
BmrFI CCNGG 3 cut(s) 70, 88, 580
BpiI GAAGAC 3 cut(s) 98, 356, 367
Bpu1102I GCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 338
BsaAI YACGTR 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 140, 448
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 278
Bse118I RCCGGY 1 cut(s) 152
BseBI CCWGG 3 cut(s) 70, 88, 580
BseDI CCNNGG 2 cut(s) 140, 448
BseGI GGATG 1 cut(s) 561
BseLI CCNNNNNNNGG 2 cut(s) 152, 278
BseX3I CGGCCG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 352, 605
BseYI CCCAGC 1 cut(s) 441
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 5 cut(s) 145, 156, 362, 453, 602
BshNI GGYRCC 1 cut(s) 575
BsiEI CGRYCG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 2 cut(s) 150, 336
BslI CCNNNNNNNGG 2 cut(s) 152, 278
BsmFI GGGAC 2 cut(s) 150, 336
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 5 cut(s) 145, 156, 362, 453, 602
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 32
Bsp1720I GCTNAGC 1 cut(s) 390
Bsp19I CCATGG 1 cut(s) 448
BspACI CCGC 3 cut(s) 97, 404, 596
BspANI GGCC 5 cut(s) 145, 156, 362, 453, 602
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 454, 577
BspMAI CTGCAG 1 cut(s) 421
BspT107I GGYRCC 1 cut(s) 575
BspTI CTTAAG 1 cut(s) 584
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 140, 448
BssT1I CCWWGG 1 cut(s) 448
Bst2UI CCWGG 3 cut(s) 70, 88, 580
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 1 cut(s) 228
BstAFI CTTAAG 1 cut(s) 584
BstBAI YACGTR 1 cut(s) 473
BstC8I GCNNGC 5 cut(s) 84, 214, 250, 267, 406
BstDEI CTNAG 1 cut(s) 390
BstDSI CCRYGG 1 cut(s) 448
BstF5I GGATG 1 cut(s) 561
BstFNI CGCG 1 cut(s) 387
BstHHI GCGC 1 cut(s) 389
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 599
BstNI CCWGG 3 cut(s) 70, 88, 580
BstSCI CCNGG 3 cut(s) 68, 86, 578
BstSFI CTRYAG 1 cut(s) 417
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 2 cut(s) 352, 605
BstV2I GAAGAC 3 cut(s) 98, 356, 367
BstXI CCANNNNNNTGG 2 cut(s) 370, 449
BstZI CGGCCG 1 cut(s) 143
BsuRI GGCC 5 cut(s) 145, 156, 362, 453, 602
BtgI CCRYGG 1 cut(s) 448
BtgZI GCGATG 1 cut(s) 281
BtsCI GGATG 1 cut(s) 561
Cac8I GCNNGC 5 cut(s) 84, 214, 250, 267, 406
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 1 cut(s) 389
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 155, 452
CseI GACGC 2 cut(s) 332, 393
CsiI ACCWGGT 1 cut(s) 68
Csp6I GTAC 1 cut(s) 193
CviAII CATG 4 cut(s) 176, 199, 449, 569
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 390
EaeI YGGCCR 1 cut(s) 143
EagI CGGCCG 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 448
Eco24I GRGCYC 1 cut(s) 32
Eco52I CGGCCG 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 22, 368
Eco72I CACGTG 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 30
EcoRII CCWGG 3 cut(s) 68, 86, 578
EcoT14I CCWWGG 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 4 cut(s) 179, 202, 452, 572
FaiI YATR 8 cut(s) 60, 177, 200, 355, 450, 532, 534, 570
FaqI GGGAC 2 cut(s) 150, 336
FatI CATG 4 cut(s) 175, 198, 448, 568
FauI CCCGC 2 cut(s) 104, 397
FauNDI CATATG 1 cut(s) 532
Fnu4HI GCNGC 2 cut(s) 341, 594
FokI GGATG 1 cut(s) 568
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 341, 594
GlaI GCGC 1 cut(s) 388
GluI GCNGC 2 cut(s) 341, 594
GsaI CCCAGC 1 cut(s) 445
HaeIII GGCC 5 cut(s) 145, 156, 362, 453, 602
HapII CCGG 1 cut(s) 153
HgaI GACGC 2 cut(s) 332, 393
HhaI GCGC 1 cut(s) 389
Hin1II CATG 4 cut(s) 179, 202, 452, 572
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 3 cut(s) 282, 307, 410
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 4 cut(s) 25, 40, 64, 230
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 4 cut(s) 115, 470, 493, 583
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 3 cut(s) 18, 185, 472
HpyCH4V TGCA 3 cut(s) 340, 419, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 599
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 3 cut(s) 18, 185, 472
Hsp92II CATG 4 cut(s) 179, 202, 452, 572
HspAI GCGC 1 cut(s) 387
LmnI GCTCC 1 cut(s) 450
Lsp1109I GCAGC 2 cut(s) 352, 605
MabI ACCWGGT 1 cut(s) 68
MaeII ACGT 3 cut(s) 18, 185, 472
MaeIII GTNAC 1 cut(s) 502
MboII GAAGA 9 cut(s) 103, 114, 127, 130, 245, 316, 361, 367, 623
MfeI CAATTG 1 cut(s) 465
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 2 cut(s) 365, 465
MnlI CCTC 6 cut(s) 150, 201, 313, 415, 546, 592
MroXI GAANNNNTTC 2 cut(s) 134, 521
MseI TTAA 2 cut(s) 75, 585
MslI CAYNNNNRTG 2 cut(s) 203, 573
MspA1I CMGCKG 1 cut(s) 596
MspCI CTTAAG 1 cut(s) 584
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 3 cut(s) 70, 88, 580
MunI CAATTG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 3 cut(s) 70, 88, 580
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 1 cut(s) 599
NcoI CCATGG 1 cut(s) 448
NdeI CATATG 1 cut(s) 532
NlaIII CATG 4 cut(s) 179, 202, 452, 572
NlaIV GGNNCC 2 cut(s) 454, 577
NmeAIII GCCGAG 2 cut(s) 91, 121
PctI GAATGC 1 cut(s) 252
PdmI GAANNNNTTC 2 cut(s) 134, 521
PfeI GAWTC 3 cut(s) 282, 307, 410
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 2 cut(s) 342, 595
PmaCI CACGTG 1 cut(s) 473
PmlI CACGTG 1 cut(s) 473
Ppu21I YACGTR 1 cut(s) 473
Psp124BI GAGCTC 1 cut(s) 32
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 3 cut(s) 68, 86, 578
PspCI CACGTG 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 441
PspGI CCWGG 3 cut(s) 68, 86, 578
PspN4I GGNNCC 2 cut(s) 454, 577
PspPI GGNCC 2 cut(s) 155, 452
PstI CTGCAG 1 cut(s) 421
PstNI CAGNNNCTG 1 cut(s) 346
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 2 cut(s) 203, 573
SacI GAGCTC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 75, 585
SatI GCNGC 2 cut(s) 341, 594
Sau96I GGNCC 2 cut(s) 155, 452
ScrFI CCNGG 3 cut(s) 70, 88, 580
SduI GDGCHC 1 cut(s) 32
SexAI ACCWGGT 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 417
SmiMI CAYNNNNRTG 2 cut(s) 203, 573
SmlI CTYRAG 2 cut(s) 317, 584
SmoI CTYRAG 2 cut(s) 317, 584
Sse9I AATT 2 cut(s) 365, 465
SsiI CCGC 3 cut(s) 97, 404, 596
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 3 cut(s) 68, 86, 578
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 3 cut(s) 21, 188, 475
TasI AATT 2 cut(s) 365, 465
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 3 cut(s) 282, 307, 410
Tru1I TTAA 2 cut(s) 75, 585
Tru9I TTAA 2 cut(s) 75, 585
TseI GCWGC 2 cut(s) 340, 593
TspDTI ATGAA 3 cut(s) 164, 215, 572
TspGWI ACGGA 2 cut(s) 152, 533
Van91I CCANNNNNTGG 1 cut(s) 278
Vha464I CTTAAG 1 cut(s) 584
XmnI GAANNNNTTC 2 cut(s) 134, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.