Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002962.1

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Reverse (-)

32686 .. 33846

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002962.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgttatccctggggagcacttcaggaagcaccggcagaacaatgtcaagacctggtttaacgaaccagcaccaggaagagaaatggcaaagctgtgaaaatctttcctacgcctactgctggacctctccatccagttgggaacttgcagcaacgatcgggatctcggttgatcatcgcaggaagaaccattctctcaagaggtttcaagccaatgttcttggcctgaagacgtacaagcagaagttggttaattctttgtttcaggctcgtgattctgaagcagaggaggtagcaaatgcaaccccgctccaacgtcctctcttggcaattcaacaggggaaacgacttggtattgagcgggtcagtgtccgccatgttggggccagggcaaagaaggccgctgaggctaaggaagaaaagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

142

Amino Acids

15.86

Weight (kDa)

9.95

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	310, 361
AciI	CCGC	4 cut(s)	308, 361, 373, 402
AclWI	GGATC	1 cut(s)	170
AcuI	CTGAAG	3 cut(s)	6, 248, 300
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	73, 120, 382
AgsI	TTSAA	2 cut(s)	209, 335
AjnI	CCWGG	4 cut(s)	9, 52, 72, 386
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	3 cut(s)	223, 384, 399
ApeKI	GCWGC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	123, 384
AvaII	GGWCC	1 cut(s)	123
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	1 cut(s)	139
BciT130I	CCWGG	4 cut(s)	11, 54, 74, 388
BclI	TGATCA	1 cut(s)	172
BglI	GCCNNNNNGGC	1 cut(s)	407
BisI	GCNGC	2 cut(s)	150, 402
BlsI	GCNGC	2 cut(s)	151, 403
Bme1390I	CCNGG	4 cut(s)	11, 54, 74, 388
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	2 cut(s)	123, 384
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	4 cut(s)	11, 54, 74, 388
BpiI	GAAGAC	1 cut(s)	236
Bpu10I	CCTNAGC	2 cut(s)	405, 411
BpuEI	CTTGAG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	9, 10, 387
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 120, 382
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	135
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	4 cut(s)	11, 54, 74, 388
BseDI	CCNNGG	3 cut(s)	9, 10, 387
BseGI	GGATG	1 cut(s)	131
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	3 cut(s)	73, 120, 382
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	3 cut(s)	225, 386, 401
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	73, 120, 382
BsnI	GGCC	3 cut(s)	225, 386, 401
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	156, 162, 172
BspACI	CCGC	4 cut(s)	308, 361, 373, 402
BspANI	GGCC	3 cut(s)	225, 386, 401
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	385
BspPI	GGATC	1 cut(s)	170
BsrBI	CCGCTC	2 cut(s)	310, 361
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	3 cut(s)	9, 10, 387
BssMI	GATC	3 cut(s)	156, 162, 172
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	4 cut(s)	11, 54, 74, 388
Bst6I	CTCTTC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	405, 411
BstF5I	GGATG	1 cut(s)	131
BstKTI	GATC	3 cut(s)	159, 165, 175
BstMBI	GATC	3 cut(s)	156, 162, 172
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 407
BstNI	CCWGG	4 cut(s)	11, 54, 74, 388
BstSCI	CCNGG	4 cut(s)	9, 52, 72, 386
BstV1I	GCAGC	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	225, 386, 401
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	373
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	123, 384
CsiI	ACCWGGT	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	7 cut(s)	93, 212, 225, 269, 386, 401, 410
CviKI_1	RGCY	7 cut(s)	93, 212, 225, 269, 386, 401, 410
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	405, 411
DpnI	GATC	3 cut(s)	158, 164, 174
DpnII	GATC	3 cut(s)	156, 162, 172
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	123
Eco57I	CTGAAG	3 cut(s)	6, 248, 300
EcoRII	CCWGG	4 cut(s)	9, 52, 72, 386
FaeI	CATG	1 cut(s)	380
FaiI	YATR	1 cut(s)	378
FatI	CATG	1 cut(s)	376
FauI	CCCGC	2 cut(s)	315, 354
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	150, 402
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	150, 402
GluI	GCNGC	2 cut(s)	150, 402
HaeIII	GGCC	3 cut(s)	225, 386, 401
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	1 cut(s)	380
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	5 cut(s)	24, 48, 160, 199, 272
HpyAV	CCTTC	1 cut(s)	391
HpyCH4IV	ACGT	2 cut(s)	233, 316
HpyCH4V	TGCA	2 cut(s)	149, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 407
HpyF3I	CTNAG	2 cut(s)	405, 411
HpySE526I	ACGT	2 cut(s)	233, 316
Hsp92II	CATG	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	156, 162, 172
LmnI	GCTCC	2 cut(s)	15, 315
Lsp1109I	GCAGC	1 cut(s)	161
MabI	ACCWGGT	1 cut(s)	52
MaeII	ACGT	2 cut(s)	233, 316
MalI	GATC	3 cut(s)	158, 164, 174
MbiI	CCGCTC	2 cut(s)	310, 361
MboI	GATC	3 cut(s)	156, 162, 172
MboII	GAAGA	4 cut(s)	89, 196, 241, 428
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	2 cut(s)	253, 330
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	6 cut(s)	136, 195, 280, 283, 330, 400
MseI	TTAA	2 cut(s)	59, 252
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	4 cut(s)	11, 54, 74, 388
MvaI	CCWGG	4 cut(s)	11, 54, 74, 388
MwoI	GCNNNNNNNGC	2 cut(s)	398, 407
NdeII	GATC	3 cut(s)	156, 162, 172
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	1 cut(s)	385
PasI	CCCWGGG	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	151, 403
Ple19I	CGATCG	1 cut(s)	159
Psp6I	CCWGG	4 cut(s)	9, 52, 72, 386
PspGI	CCWGG	4 cut(s)	9, 52, 72, 386
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	2 cut(s)	123, 384
PsuI	RGATCY	1 cut(s)	162
PvuI	CGATCG	1 cut(s)	159
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	59, 252
SatI	GCNGC	2 cut(s)	150, 402
Sau3AI	GATC	3 cut(s)	156, 162, 172
Sau96I	GGNCC	2 cut(s)	123, 384
ScrFI	CCNGG	4 cut(s)	11, 54, 74, 388
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	7 cut(s)	55, 95, 128, 206, 236, 294, 319
SexAI	ACCWGGT	1 cut(s)	52
SinI	GGWCC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	253, 330
SsiI	CCGC	4 cut(s)	308, 361, 373, 402
StyD4I	CCNGG	4 cut(s)	9, 52, 72, 386
TaiI	ACGT	2 cut(s)	236, 319
TasI	AATT	2 cut(s)	253, 330
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	59, 252
Tru9I	TTAA	2 cut(s)	59, 252
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	1 cut(s)	149
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.