Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Reverse (-)

66825220 .. 66828189

Gene Structure 2970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG448700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAAGGTCAGGGCTCTCCGTGGCTTCACTCCGGAAGAGTTGAAGGTTGGTTTCTATAAATCCGGCTCCTCTAAAGTTATTTTTGGCGCGCTTGCTTTGATTCCAGGGGAACTTGCAGCAACGATCGGGATCTCGGTTGATCATCGCAGGAAGAACCATTCTCTCAAGAGGTTTCAAGCCAATCTTCTTGGCCTGAAGACGTACAAGCAGAAGTTGGTTGTCTTCCCAAGGCGCAAGTTTAAGGCTGGTGATTCTGCAGCAGAGGAGGTAGCAAATGCAACCCCGCTCCAACGTCCTCTCTTGGCAATTCAACAGGGGATACCAGTCAGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

111

Amino Acids

12.19

Weight (kDa)

10.66

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13e	PF01294	33 - 104	1.1e-18	Ribosomal protein L13e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	286
AccII	CGCG	1 cut(s)	89
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	43, 176, 311
AjnI	CCWGG	1 cut(s)	103
AlwI	GGATC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	333
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	116, 257
AspLEI	GCGC	3 cut(s)	89, 91, 234
AsuHPI	GGTGA	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	203, 214
BbvI	GCAGC	2 cut(s)	128, 269
BciT130I	CCWGG	1 cut(s)	105
BciVI	GTATCC	1 cut(s)	312
BclI	TGATCA	1 cut(s)	139
BfmI	CTRYAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	312
BisI	GCNGC	2 cut(s)	117, 258
BlsI	GCNGC	2 cut(s)	118, 259
Bme1390I	CCNGG	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	105
BpiI	GAAGAC	2 cut(s)	203, 214
BpuEI	CTTGAG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	19, 104, 227
BsaWI	WCCGGW	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	128
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	3 cut(s)	19, 104, 227
BseJI	GATNNNNATC	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	323
BsePI	GCGCGC	1 cut(s)	87
BseRI	GAGGAG	2 cut(s)	58, 278
BseXI	GCAGC	2 cut(s)	128, 269
Bsh1236I	CGCG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	32, 63
BsnI	GGCC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	123, 129, 139
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	192
BspEI	TCCGGA	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	67
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	3 cut(s)	19, 104, 227
BssHII	GCGCGC	1 cut(s)	87
BssMI	GATC	3 cut(s)	123, 129, 139
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	89, 93
BstDSI	CCRYGG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	3 cut(s)	89, 91, 234
BstKTI	GATC	3 cut(s)	126, 132, 142
BstMBI	GATC	3 cut(s)	123, 129, 139
BstMCI	CGRYCG	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	128, 269
BstV2I	GAAGAC	2 cut(s)	203, 214
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	89, 93
CaiI	CAGNNNCTG	1 cut(s)	333
CfoI	GCGC	3 cut(s)	89, 91, 234
Csp6I	GTAC	1 cut(s)	202
CviJI	RGCY	6 cut(s)	14, 24, 66, 179, 192, 245
CviKI_1	RGCY	6 cut(s)	14, 24, 66, 179, 192, 245
CviQI	GTAC	1 cut(s)	202
DpnI	GATC	3 cut(s)	125, 131, 141
DpnII	GATC	3 cut(s)	123, 129, 139
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	227
FaiI	YATR	1 cut(s)	57
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FauI	CCCGC	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	117, 258
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	117, 258
GlaI	GCGC	3 cut(s)	88, 90, 233
GluI	GCNGC	2 cut(s)	117, 258
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	2 cut(s)	32, 63
HhaI	GCGC	3 cut(s)	89, 91, 234
Hin6I	GCGC	3 cut(s)	87, 89, 232
HinP1I	GCGC	3 cut(s)	87, 89, 232
HinfI	GANTC	2 cut(s)	100, 251
HpaII	CCGG	2 cut(s)	32, 63
HphI	GGTGA	1 cut(s)	260
Hpy188III	TCNNGA	3 cut(s)	32, 127, 166
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	2 cut(s)	200, 292
HpyCH4V	TGCA	3 cut(s)	116, 257, 278
HpySE526I	ACGT	2 cut(s)	200, 292
HspAI	GCGC	3 cut(s)	87, 89, 232
Kpn2I	TCCGGA	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	123, 129, 139
LmnI	GCTCC	2 cut(s)	71, 291
LpnPI	CCDG	8 cut(s)	45, 76, 90, 117, 133, 206, 231, 299
Lsp1109I	GCAGC	2 cut(s)	128, 269
MaeII	ACGT	2 cut(s)	200, 292
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	3 cut(s)	125, 131, 141
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	3 cut(s)	123, 129, 139
MboII	GAAGA	5 cut(s)	47, 163, 176, 208, 214
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	5 cut(s)	79, 162, 256, 259, 306
MroI	TCCGGA	1 cut(s)	31
MseI	TTAA	1 cut(s)	240
MspI	CCGG	2 cut(s)	32, 63
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	89
NdeII	GATC	3 cut(s)	123, 129, 139
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	329
PauI	GCGCGC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	100, 251
PkrI	GCNGC	2 cut(s)	118, 259
Ple19I	CGATCG	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	129
PteI	GCGCGC	1 cut(s)	87
PvuI	CGATCG	1 cut(s)	126
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	117, 258
Sau3AI	GATC	3 cut(s)	123, 129, 139
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	6 cut(s)	9, 48, 173, 203, 270, 295
SfcI	CTRYAG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	227
TaiI	ACGT	2 cut(s)	203, 295
TasI	AATT	1 cut(s)	306
TfiI	GAWTC	2 cut(s)	100, 251
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	2 cut(s)	116, 257
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.