Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Reverse (-)

2132201 .. 2134743

Gene Structure 2543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G019600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGAAGCACAACAATGTCATTCCTAGCTCGCACTTCAGAAAGCATTGGCAGAATTATGTGAAAACGTGGTTTAATCAGCCAGCGCGTAAAACACGGAGAAGAAAGGCCCGTCAAGAGAAAGCTGTGAAGATTTTTCCTCGCCCTACATCTGGACCACTGCGGCCTATCGTTCATGGCCAAACGTTAAAATACAATATGAAAGTAAGATCTGGCAGAGGATTTACTCTTGAAGAACTGAAGACTGCTGGTATCCCGAAGAAGCTTGCTCCAACCATTGGCATAGCTGTTGATCATCGCCGCAAAAATCGATCTCTAGAAGGTCTTCAAGCAAATGTTCAGAGGTTGAAAACATACAAGGCCAAGTTAGTTGTCTTCCCAAGACGTGCACGGAAGTTGAAGGCTGGCGATTCAAGTCCTGAGGAGCTTGCCAATGCTACCCAAATTCAAGGCCCTTACATGCCCATTGTAAGGGAGAAGCCAACTGTTGAGCTTGTGAAGGTTACAAATGATATGAAGGCATTTAAGGCTTATGACAAGCTACGCGTTGAGCGTATGAATGAACGTCATGTTGGTGCGAGACTGAAGAAGGCTGCCGAGGCAGAGAAGGAAGAAAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

208

Amino Acids

23.94

Weight (kDa)

10.91

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	278
AccII	CGCG	2 cut(s)	88, 546
AciI	CCGC	2 cut(s)	163, 301
AclI	AACGTT	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	444
AcuI	CTGAAG	3 cut(s)	22, 260, 605
AfiI	CCNNNNNNNGG	3 cut(s)	152, 278, 471
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	6 cut(s)	233, 329, 349, 400, 414, 449
AjiI	CACGTC	1 cut(s)	386
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	7 cut(s)	30, 125, 265, 287, 427, 493, 541
AluI	AGCT	7 cut(s)	30, 125, 265, 287, 427, 493, 541
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	574
Alw44I	GTGCAC	1 cut(s)	387
AoxI	GGCC	5 cut(s)	108, 164, 178, 360, 451
ApaLI	GTGCAC	1 cut(s)	387
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	3 cut(s)	109, 155, 452
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	420
BaeGI	GKGCMC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	180
BbsI	GAAGAC	3 cut(s)	248, 317, 367
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	580
BciVI	GTATCC	1 cut(s)	263
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	2 cut(s)	27, 317
BfuI	GTATCC	1 cut(s)	263
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	3 cut(s)	164, 301, 594
BlsI	GCNGC	3 cut(s)	165, 302, 595
Bme18I	GGWCC	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	386
BmgT120I	GGNCC	3 cut(s)	109, 155, 452
BpiI	GAAGAC	3 cut(s)	248, 317, 367
Bsa29I	ATCGAT	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	597
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 278, 471
Bse21I	CCTNAGG	1 cut(s)	420
BseCI	ATCGAT	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	597
BseLI	CCNNNNNNNGG	3 cut(s)	152, 278, 471
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	580
Bsh1236I	CGCG	2 cut(s)	88, 546
BshFI	GGCC	5 cut(s)	110, 166, 180, 362, 453
BshVI	ATCGAT	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	391
BslI	CCNNNNNNNGG	3 cut(s)	152, 278, 471
BsmAI	GTCTC	1 cut(s)	574
BsnI	GGCC	5 cut(s)	110, 166, 180, 362, 453
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	209, 292, 311
BspACI	CCGC	2 cut(s)	163, 301
BspANI	GGCC	5 cut(s)	110, 166, 180, 362, 453
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	310
BspFNI	CGCG	2 cut(s)	88, 546
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	3 cut(s)	209, 292, 311
Bst4CI	ACNGT	1 cut(s)	487
BstC8I	GCNNGC	5 cut(s)	32, 84, 267, 406, 429
BstDEI	CTNAG	1 cut(s)	420
BstFNI	CGCG	2 cut(s)	88, 546
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	3 cut(s)	212, 295, 314
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	3 cut(s)	209, 292, 311
BstMWI	GCNNNNNNNGC	2 cut(s)	527, 599
BstNSI	RCATGY	1 cut(s)	463
BstSLI	GKGCMC	1 cut(s)	391
BstUI	CGCG	2 cut(s)	88, 546
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	3 cut(s)	248, 317, 367
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	5 cut(s)	110, 166, 180, 362, 453
BsuTUI	ATCGAT	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	281
BtrI	CACGTC	1 cut(s)	386
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	5 cut(s)	32, 84, 267, 406, 429
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	3 cut(s)	109, 155, 452
ClaI	ATCGAT	1 cut(s)	310
CviAII	CATG	3 cut(s)	176, 460, 569
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	3 cut(s)	211, 294, 313
DpnII	GATC	3 cut(s)	209, 292, 311
EaeI	YGGCCR	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	155
Eco57I	CTGAAG	3 cut(s)	22, 260, 605
Eco81I	CCTNAGG	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	452
FaeI	CATG	3 cut(s)	179, 463, 572
FatI	CATG	3 cut(s)	175, 459, 568
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	164, 301, 594
Fsp4HI	GCNGC	3 cut(s)	164, 301, 594
FspBI	CTAG	2 cut(s)	27, 317
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	3 cut(s)	164, 301, 594
HaeIII	GGCC	5 cut(s)	110, 166, 180, 362, 453
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	3 cut(s)	179, 463, 572
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	1 cut(s)	410
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	2 cut(s)	41, 342
Hpy188III	TCNNGA	6 cut(s)	116, 153, 230, 256, 317, 419
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	6 cut(s)	314, 394, 493, 511, 583, 601
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	4 cut(s)	68, 185, 385, 565
HpyCH4V	TGCA	1 cut(s)	389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	527, 599
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	4 cut(s)	68, 185, 385, 565
Hsp92II	CATG	3 cut(s)	179, 463, 572
HspAI	GCGC	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	209, 292, 311
LmnI	GCTCC	2 cut(s)	274, 424
LpnPI	CCDG	6 cut(s)	96, 138, 198, 234, 390, 432
Lsp1109I	GCAGC	1 cut(s)	580
MaeI	CTAG	2 cut(s)	27, 317
MaeII	ACGT	4 cut(s)	68, 185, 385, 565
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	3 cut(s)	211, 294, 313
MboI	GATC	3 cut(s)	209, 292, 311
MboII	GAAGA	9 cut(s)	114, 142, 245, 253, 271, 317, 367, 598, 623
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	2 cut(s)	55, 444
MluI	ACGCGT	1 cut(s)	544
MluNI	TGGCCA	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	5 cut(s)	150, 212, 336, 415, 592
Mox20I	TGGCCA	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	3 cut(s)	75, 188, 525
MslI	CAYNNNNRTG	2 cut(s)	15, 573
Msp20I	TGGCCA	1 cut(s)	180
MvnI	CGCG	2 cut(s)	88, 546
MwoI	GCNNNNNNNGC	2 cut(s)	527, 599
NdeII	GATC	3 cut(s)	209, 292, 311
NlaIII	CATG	3 cut(s)	179, 463, 572
NmeAIII	GCCGAG	1 cut(s)	622
NspI	RCATGY	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	410
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	165, 302, 595
Psp1406I	AACGTT	1 cut(s)	185
PspPI	GGNCC	3 cut(s)	109, 155, 452
PsuI	RGATCY	1 cut(s)	209
RseI	CAYNNNNRTG	2 cut(s)	15, 573
SaqAI	TTAA	3 cut(s)	75, 188, 525
SatI	GCNGC	3 cut(s)	164, 301, 594
Sau3AI	GATC	3 cut(s)	209, 292, 311
Sau96I	GGNCC	3 cut(s)	109, 155, 452
SduI	GDGCHC	1 cut(s)	391
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	2 cut(s)	15, 573
Sse9I	AATT	2 cut(s)	55, 444
SsiI	CCGC	2 cut(s)	163, 301
SspMI	CTAG	2 cut(s)	27, 317
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	4 cut(s)	71, 188, 388, 568
TaqI	TCGA	1 cut(s)	310
TasI	AATT	2 cut(s)	55, 444
TauI	GCSGC	2 cut(s)	166, 303
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	3 cut(s)	75, 188, 525
Tru9I	TTAA	3 cut(s)	75, 188, 525
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	1 cut(s)	593
TspDTI	ATGAA	5 cut(s)	164, 215, 530, 572, 576
TspGWI	ACGGA	2 cut(s)	112, 406
TspRI	CASTG	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	278
VneI	GTGCAC	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	444
XbaI	TCTAGA	1 cut(s)	316
XceI	RCATGY	1 cut(s)	463
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	2 cut(s)	27, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.