Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Reverse (-)

66303732 .. 66304855

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60406

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAGGTCAGGGCTCTCCGTGGCTTCACTCTGGAAGAGTTGAAGTTTTGTTTAATTGTTGGGACAACTGCACAAAACTGCAGTCACAGACTCAATAAAAGGCTTGCTTTGATTCCAGGGGAACTTGCAGCAACGATCGGGATCTCGGTTGATCATCGCAGGAAGAACCATTCTCTCAAGAGGTTTCAAGCCAATGTTCTTGGCCTGAAGACGTACAAGCAGAAGTTGGTTAATTGTCTTCCCAAGGCGCAAGCTGGTGATTCTGCAGCAGAGGAGGTAGCAAATGCAACCCCGCTCCAACGTCCTCTCTTGGCAATTCAACAGGGGAAACGAGTCAGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

114

Amino Acids

12.58

Weight (kDa)

10.4

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13e	PF01294	36 - 109	2.6e-15	Ribosomal protein L13e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	295
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	3 cut(s)	43, 188, 320
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
AlwI	GGATC	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	342
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	128, 266
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
AspLEI	GCGC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	215, 230
BbvI	GCAGC	2 cut(s)	140, 278
BciT130I	CCWGG	1 cut(s)	117
BclI	TGATCA	1 cut(s)	151
BfmI	CTRYAG	2 cut(s)	79, 264
BisI	GCNGC	2 cut(s)	129, 267
BlsI	GCNGC	2 cut(s)	130, 268
Bme1390I	CCNGG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	117
BpiI	GAAGAC	2 cut(s)	215, 230
BpuEI	CTTGAG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	19, 116, 243
Bse8I	GATNNNNATC	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	19, 116, 243
BseJI	GATNNNNATC	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	140, 278
BsgI	GTGCAG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	204
BsiEI	CGRYCG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	3 cut(s)	135, 141, 151
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	1 cut(s)	204
BspMAI	CTGCAG	2 cut(s)	83, 268
BspPI	GGATC	1 cut(s)	149
BsrBI	CCGCTC	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	19, 116, 243
BssMI	GATC	3 cut(s)	135, 141, 151
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	105, 252
BstDSI	CCRYGG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	3 cut(s)	138, 144, 154
BstMBI	GATC	3 cut(s)	135, 141, 151
BstMCI	CGRYCG	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	2 cut(s)	79, 264
BstV1I	GCAGC	2 cut(s)	140, 278
BstV2I	GAAGAC	2 cut(s)	215, 230
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	105, 252
CaiI	CAGNNNCTG	1 cut(s)	342
CfoI	GCGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	214
CviJI	RGCY	6 cut(s)	14, 24, 103, 191, 204, 254
CviKI_1	RGCY	6 cut(s)	14, 24, 103, 191, 204, 254
CviQI	GTAC	1 cut(s)	214
DpnI	GATC	3 cut(s)	137, 143, 153
DpnII	GATC	3 cut(s)	135, 141, 151
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	243
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FaqI	GGGAC	1 cut(s)	76
FauI	CCCGC	1 cut(s)	300
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	129, 267
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	129, 267
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	2 cut(s)	129, 267
HaeIII	GGCC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	4 cut(s)	90, 112, 260, 333
HphI	GGTGA	1 cut(s)	269
Hpy188III	TCNNGA	3 cut(s)	32, 139, 178
HpyCH4IV	ACGT	2 cut(s)	212, 301
HpyCH4V	TGCA	5 cut(s)	71, 81, 128, 266, 287
HpySE526I	ACGT	2 cut(s)	212, 301
HspAI	GCGC	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	135, 141, 151
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	7 cut(s)	17, 102, 129, 145, 218, 240, 308
Lsp1109I	GCAGC	2 cut(s)	140, 278
MaeII	ACGT	2 cut(s)	212, 301
MaeIII	GTNAC	2 cut(s)	83, 338
MalI	GATC	3 cut(s)	137, 143, 153
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	3 cut(s)	135, 141, 151
MboII	GAAGA	4 cut(s)	47, 175, 220, 230
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	3 cut(s)	54, 232, 315
MlyI	GAGTC	2 cut(s)	84, 342
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	4 cut(s)	174, 265, 268, 315
MseI	TTAA	2 cut(s)	53, 231
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
NdeII	GATC	3 cut(s)	135, 141, 151
NmuCI	GTSAC	2 cut(s)	83, 338
PfeI	GAWTC	2 cut(s)	112, 260
PkrI	GCNGC	2 cut(s)	130, 268
Ple19I	CGATCG	1 cut(s)	138
PleI	GAGTC	2 cut(s)	84, 341
PpsI	GAGTC	2 cut(s)	84, 341
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PstI	CTGCAG	2 cut(s)	83, 268
PstNI	CAGNNNCTG	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	141
PvuI	CGATCG	1 cut(s)	138
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	53, 231
SatI	GCNGC	2 cut(s)	129, 267
Sau3AI	GATC	3 cut(s)	135, 141, 151
SchI	GAGTC	2 cut(s)	84, 342
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	6 cut(s)	9, 185, 215, 256, 279, 304
SfcI	CTRYAG	2 cut(s)	79, 264
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	54, 232, 315
SsiI	CCGC	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	2 cut(s)	215, 304
TasI	AATT	3 cut(s)	54, 232, 315
TfiI	GAWTC	2 cut(s)	112, 260
Tru1I	TTAA	2 cut(s)	53, 231
Tru9I	TTAA	2 cut(s)	53, 231
TseFI	GTSAC	2 cut(s)	83, 338
TseI	GCWGC	2 cut(s)	128, 266
Tsp45I	GTSAC	2 cut(s)	83, 338
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.